Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02020 ATGGAAAAAGAGAAACTTGATCGGCTTCCAAATCATTTAAAGATGCTGAAGATGGACAATGACGTCGATTTGTTTGAGGAAAGAAAATGCTTCTCTTATTTCTATGACATGCACCTATCCATTGTTTGTTGGGAGTGCTCTCTTGACAGTTATTCTTGTCTTAAACACTTCAAGTTGTTTTGCTTATGTGAAAATGATAAAAGATTTGTTCTAGTTCGGTATACTATGATTGAGATAAGTACATTGGTTGAAGCATTAGAAAGAGAACCACACACAATAAAAGCTTGGGCAACGCGAAACTATGGAGTGGTTTCTGCTAAAGCTGAGGATACTTGCATGCATGAACAAGATACGGAGAGAGCCATTTGCAAAACCAAGAATTGTGACGAAGGGAAAAGCTCGCCTTCTAATCCAGTAACAAATAAGAGGTAG 432 0.3773 MEKEKLDRLPNHLKMLKMDNDVDLFEERKCFSYFYDMHLSIVCWECSLDSYSCLKHFKLFCLCENDKRFVLVRYTMIEISTLVEALEREPHTIKAWATRNYGVVSAKAEDTCMHEQDTERAICKTKNCDEGKSSPSNPVTNKR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02020 143 Pfam C5HC2 zinc finger 35 81 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02020 Trre-Chr3 17799248 17799679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02020 17 131 JUMONJI Transcription Factor Family AT1G30810 41.739 9.36e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02020 K11446 - gmx:100784581 185.267