Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02018 ATGAAACCCTGCATGTTTTTTGTCTTGTTCTATTTTCTAACCTATGTTCATGTTCAAGGTCGTTTTGTTGTGGAGAAAAACAGCATAACTGTTCTATCACCACAAAAAATAAGAGGTAAAAAAGATGGTGCTATAGGAAACTTTGGTCTTCCAAATTATGGAGGGTATATTGTAGGATCACTTGTTTATCCTCAAAAAGGTTCTCATGGTTGTGATGTATTTGAAGGTGATAAGCCTTTTAAGTTTCGATCTTATCGTCCAACTATTGTTCTTCTTGATCGTGGAGAATGTTATTTTGCCTTAAAGGTATGGCATGCTCAACTAGCTGGAGCGGCAGCAGTTTTAGTCGCTGACAGCGTTGATGAGTCACTGATAACAATGGATTCTCCCGAGGAAAGCACCGATGCTGACGGCTACATAGAAAAGATTCTAATTCCATCAGCACTAATAGATAAATCCTTTGGTGATTCATTGAAGGATTCTCTAAATAACAAGGACGAAGTTTTGCTAAGAATAGATTGGAGAGAGTCAGTACCTCACCCTGATAATCGAGTCGAGTACGAGTTCTGGACCAACAGCAACGACGAATGCGGTGCTCGTTGCGATGAACAGATGAATTTCGTGAAGAATTTCAAAGGTCATGCTCAGATTCTTGAGAGAGGTGGATATACATTGTTTACTCCACATTACATAACATGGTTTTGTCCACAGCCATTCGTTGAAAGTAGCCAATGCAAGTCTCAATGTATAAACCGCGGAAGATATTGCGCGCCGGATCCGGAGAAAGATTTTGGTGAAGGATATGAAGGGAAGGATGTAGTGTATGAGAATTTGAGGCAGCTTTGTGTTCATAGAGTAGCGAACGAGAGTAACCGTTCGTGGGTTTGGTGGGATTATGTAACTGATTTTCATGTTAGATGTTCTATGAAGGAGAAAAAATACAGCAAAGATTGCGCTGAAGATGTCATGAAATCATTAGATCTTCCGATCGAGAAAATTAAGAAATGTATCGGTGACCCTGAAGCTGATGTGGAGAATGAAGTGCTAAAGATTGAACAAACAGCACAGATCGGAGGAGGATCTCGTGGCGACGTCACCATTTTGCCAACATTGGTTTTAAACAATGTCCAGTATAGAGGAAAATTGGAGAGAACATCTGTCTTGAAGGCTATATGTGCTGGATTTAAGGAGACTACTGAGCCTCAAGTTTGTTTAAGTGAAGATATTGAAACGAATGAGTGTCACGAAAGAAACGGTGGATGCTGGCAAGACAGAAGTGCTAATGTTACTGCTTGCAAGGATACTTTTAGGGGAAGAATTTGCGAGTGTCCTGTTGCGAAGGGTGTTCAATATAAGGGTGATGGTTATACAACATGTGAAGCTTTTGGACCTGCAAGGTGTTCTTTAAACAACGGAGGCTGTTGGTCAGAAACTAGAAATAAGATTACTTTCTCGGCTTGCTCAGAATCCAAGGTAAATGGCTGCCACTGTCCAGTTGGATTTCTTGGAGATGGCAATAAATGTGAAGATGTCGATGAATGTAAGGAAAAAAGTGCTTGTCAGTGTGATGGTTGCAGCTGTAAGAACACTTGGGGAAGCTATGATTGTAAGTGCAAAGGAGATCTTCTATATATCAAGGAACAAGATATTTGTATCGAAAGAAGTGGTTCAAAACTTGGAAAGGTCATCGCCTTTGTGGTCATAGCAGTTGTCGTAGGAGCTGGTCTAGCTGGTTACGTATTCTACAAATATAGACTCCGGTCTTACATGGACTCGGAGATTATGGCTATCATGTCACAATACATGCCGCTGGACCAGCAAAACAATGTAGTTCATGCTGAATCTCAGCCTTTTCGACAAGAAGGCACGGTGTAA 1875 0.4096 MKPCMFFVLFYFLTYVHVQGRFVVEKNSITVLSPQKIRGKKDGAIGNFGLPNYGGYIVGSLVYPQKGSHGCDVFEGDKPFKFRSYRPTIVLLDRGECYFALKVWHAQLAGAAAVLVADSVDESLITMDSPEESTDADGYIEKILIPSALIDKSFGDSLKDSLNNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPQPFVESSQCKSQCINRGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRCSMKEKKYSKDCAEDVMKSLDLPIEKIKKCIGDPEADVENEVLKIEQTAQIGGGSRGDVTILPTLVLNNVQYRGKLERTSVLKAICAGFKETTEPQVCLSEDIETNECHERNGGCWQDRSANVTACKDTFRGRICECPVAKGVQYKGDGYTTCEAFGPARCSLNNGGCWSETRNKITFSACSESKVNGCHCPVGFLGDGNKCEDVDECKEKSACQCDGCSCKNTWGSYDCKCKGDLLYIKEQDICIERSGSKLGKVIAFVVIAVVVGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAESQPFRQEGTV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02018 624 FunFam Vacuolar-sorting receptor 1 19 181 - -
Trre3g02018 624 FunFam vacuolar-sorting receptor 1 404 460 - -
Trre3g02018 624 Gene3D - 19 181 - -
Trre3g02018 624 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 7 609 - -
Trre3g02018 624 Gene3D Laminin 465 552 - -
Trre3g02018 624 Pfam PA domain 59 158 IPR003137 -
Trre3g02018 624 SMART egfca_6 510 552 IPR001881 GO:0005509
Trre3g02018 624 ProSitePatterns Calcium-binding EGF-like domain signature. 510 536 IPR018097 GO:0005509
Trre3g02018 624 Gene3D Laminin 404 460 - -
Trre3g02018 624 SUPERFAMILY PA domain 84 167 IPR046450 -
Trre3g02018 624 CDD EGF_CA 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02018 Trre-Chr3 17752375 17757222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02018 7 616 Miscellaneous Gene Families AT1G30900 71.336 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02018 - - gmx:100790467 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02018 3 17752375 17757222 Trre3g02018 3 17752375 17757222 ECH