Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02013 ATGTCCAATTCTTACCTCCAATTGTTGCTTCTTTTGGTTTTTTACATAATTTCAGCCAATTCAGCTCAACCTTATGAGAGAAACTATGATGAAGCTGAGTTCACTCTACAAGTCCCAACACTAGAGGAAAATGAATTAGATAATCTTTTATCCTTTGGTTACTACCATAAAAGTTGTCCTCAATTTGAGTCCATTTTGCACAACAAAGTTAAAGAATGGATTAAGAAGGATGAAACTTTAGCAGCTAGTCTCCTAAGGTTGCATTTCCATGATTGCTCTGTTAGGGGATGTGATGGCTCCATTCTATTAAAACATGAAGGAAGTGAAAGGGAAGCACAAGCAAGCAAGACATTAAGAGGCTTTGAAGTTATTGATGATATAAAGGCAGATGAAGCTGAATTGATTCCTAAGGGTCATGAAAACATTACTTCCTTGATTGAGTATTTCCAATCCAAAGGCTTGACTGTTCTTGACTTGGTTGTTCTCTCAGGGGCACATACTATTGGAAGGACAACTTCTTTTCACTTCGTTATGGCTGTCCAAGAACACACTTTAACAAAAGATGGTGCCAAGAAGAGGAACAACATGGTAACTACTTCACAAAATTACAAGACCAATATGACACCAAAACAAACCACCAAAGGTAACCATGTTCATGATCTTCAAAAGGGTCCTAAAGGAAGAAACTCTAGAGCTTCAAGGCCTCTATTTCAATGGAAAAACAAGATCTTCAATGCTAGTGAACATGAAGTTCCTAGTGGTCCAAACCCCATTTCAAATAGGTAA 786 0.3753 MSNSYLQLLLLLVFYIISANSAQPYERNYDEAEFTLQVPTLEENELDNLLSFGYYHKSCPQFESILHNKVKEWIKKDETLAASLLRLHFHDCSVRGCDGSILLKHEGSEREAQASKTLRGFEVIDDIKADEAELIPKGHENITSLIEYFQSKGLTVLDLVVLSGAHTIGRTTSFHFVMAVQEHTLTKDGAKKRNNMVTTSQNYKTNMTPKQTTKGNHVHDLQKGPKGRNSRASRPLFQWKNKIFNASEHEVPSGPNPISNR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02013 261 PANTHER PEROXIDASE 25-RELATED 129 211 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 MobiDBLite consensus disorder prediction 192 215 - -
Trre3g02013 261 Gene3D Peroxidase, domain 2 138 247 - -
Trre3g02013 261 PRINTS Haem peroxidase superfamily signature 81 95 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 PRINTS Haem peroxidase superfamily signature 158 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 Pfam Peroxidase 134 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 Pfam Peroxidase 68 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 PRINTS Plant peroxidase signature 59 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 PRINTS Plant peroxidase signature 83 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 PRINTS Plant peroxidase signature 119 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 SUPERFAMILY Heme-dependent peroxidases 50 182 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 ProSitePatterns Peroxidases active site signature. 81 92 IPR019794 GO:0004601
Trre3g02013 261 ProSiteProfiles Plant heme peroxidase family profile. 49 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre3g02013 261 MobiDBLite consensus disorder prediction 192 236 - -
Trre3g02013 261 ProSitePatterns Peroxidases proximal heme-ligand signature. 158 168 IPR019793 -
Trre3g02013 261 Gene3D - 49 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02013 Trre-Chr3 17692488 17697581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02013 46 172 Peroxidase AT1G30870 45.665 2.08e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02013 K00430 - gmx:100798229 238.039