LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g02011	ATGAATGATCTTAGAGATAAGTTTCCTATCGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACATGTCTCAAGATTTTGGAAAAACTTCTCCTCAAGTGTCAATACCATGTAACCACTGCTCAAACTGCGATAACGGCGCTGAACTTGTTGAGAGAAAACAAAAACAATTATGACTTGGTAATAAGCAATGTTCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCGGCAAATGATGATCCGAAGATGGTGCTTAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTATACTGAAAGAGGTGCAAACCATTTGGCAGCATGTAATCAGGAAGAAGAAGACTAACAGAAGACGCAACCATGACGCGCCAAATTCTGACAGCGGAAATGGAATAGATTCTGCAGTGACAGGAAATTCTGATCAAAATGAAAGGCCTTCTCGAAAAAGGAAGGAAAAGAATGAAGATGATGCTGATGAGGAGGATGAGGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGAGTTGTTTGGACCCCTTCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATCGACAAGGCTGTGCCGAAAAAAATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATATAGACTCTATCTGAAAAGAATTAGTGAAGGGGGAAACCAACAAGCGAATATGGCAGCATTGTTAGGTAGTTCTTCGGATACATCCTATTCAAGAATGACTTCTCTCGGTGGCTCTACGCAGTTTCATAACAATCCTATCAAATTCTTTGCATCTGGTGGTAGTATGAGTAGTAATGTGAATCTGCGATTCAACACTCCTACTAATGTGAATATGCATCGATTCTCTCGTGGAACTCCTCAGTTGAATAACACATTAAACAACTCAACACATGATCAGCTAAAGTTCCAATCAGCCATAACTCGTGACAATCTGAAGCCGATTTCTTCTGAAGGGCTAGATCAATTGCTACGCAGTAATAAAGGTATTACTGTTAGTCCTGATATTCAAAACATGATCAATAAGCTTCCAGATTATTATAAACCAAAAGTAGCTGAAGGATACAAAAATTTAGCCTCTCAGAATTCGCAGTTTCTTTCTGTACTTGAAAACCGAAGGCGCAACGGTATTTTGTCAAACCCTATGCAATTACCTGGAACAAACTCTTATCTTCCAAGAGAAGGTTTCGTCCATGGTTCTGCGTCTCATAAAGATAACCGAAATGCTGCTATACCTCATACCGAACCACATGAATTCAGCAATATTAATGTGCCATTTCAAGGTTGGGATAATAATCATGATGGAAGTTACCATTCTTCTCATGTGGTTGGAAGTTCAATAGGCTCAATGATTCCTCCTATGGATGCTGTTGTACCAGAAGAAAACTTGGACTATATGAAGCGTGATCGCACCGCGGAGCTAACAGAAGGGTCGTCATTCAAACCACAACAGGCATATATGATGAACAACCAGATGAAGTTTCAAAACAGTGGAGTCTCTAGTAATCATGGTTCAGTCGAAGACGCTGTCCGTGACATGATCAAGCTCAAGCAGAAGCAATTGTATGATAATTAA	1686	0.4004	MNDLRDKFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQTAITALNLLRENKNNYDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVLKGITHGACDYLLKPVILKEVQTIWQHVIRKKKTNRRRNHDAPNSDSGNGIDSAVTGNSDQNERPSRKRKEKNEDDADEEDEDDHDNDDPTAQKKARVVWTPSLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISEGGNQQANMAALLGSSSDTSYSRMTSLGGSTQFHNNPIKFFASGGSMSSNVNLRFNTPTNVNMHRFSRGTPQLNNTLNNSTHDQLKFQSAITRDNLKPISSEGLDQLLRSNKGITVSPDIQNMINKLPDYYKPKVAEGYKNLASQNSQFLSVLENRRRNGILSNPMQLPGTNSYLPREGFVHGSASHKDNRNAAIPHTEPHEFSNINVPFQGWDNNHDGSYHSSHVVGSSIGSMIPPMDAVVPEENLDYMKRDRTAELTEGSSFKPQQAYMMNNQMKFQNSGVSSNHGSVEDAVRDMIKLKQKQLYDN	561

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre3g02011	561	Gene3D	-	11	144	-	-
Trre3g02011	561	SUPERFAMILY	CheY-like	11	136	IPR011006	-
Trre3g02011	561	MobiDBLite	consensus disorder prediction	143	160	-	-
Trre3g02011	561	SUPERFAMILY	Homeodomain-like	192	251	IPR009057	-
Trre3g02011	561	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	12	325	IPR045279	GO:0009736
Trre3g02011	561	MobiDBLite	consensus disorder prediction	131	192	-	-
Trre3g02011	561	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	194	247	IPR006447	GO:0003677
Trre3g02011	561	PIRSF	RR_ARR_type-B	1	561	IPR017053	GO:0003677\|GO:0003700\|GO:0009736
Trre3g02011	561	SMART	REC_2	12	124	IPR001789	GO:0000160
Trre3g02011	561	Gene3D	-	190	253	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g02011	Trre-Chr3	17638308	17641738	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g02011	6	334	Response Regulator Gene Family	AT2G25180	56.932	7.16e-111	341

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Trre3g02011		Response_reg	2e-21	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g02011	-		K14491	tpra:123915626	861.677

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