Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02011 ATGAATGATCTTAGAGATAAGTTTCCTATCGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACATGTCTCAAGATTTTGGAAAAACTTCTCCTCAAGTGTCAATACCATGTAACCACTGCTCAAACTGCGATAACGGCGCTGAACTTGTTGAGAGAAAACAAAAACAATTATGACTTGGTAATAAGCAATGTTCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCGGCAAATGATGATCCGAAGATGGTGCTTAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTATACTGAAAGAGGTGCAAACCATTTGGCAGCATGTAATCAGGAAGAAGAAGACTAACAGAAGACGCAACCATGACGCGCCAAATTCTGACAGCGGAAATGGAATAGATTCTGCAGTGACAGGAAATTCTGATCAAAATGAAAGGCCTTCTCGAAAAAGGAAGGAAAAGAATGAAGATGATGCTGATGAGGAGGATGAGGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGAGTTGTTTGGACCCCTTCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATCGACAAGGCTGTGCCGAAAAAAATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATATAGACTCTATCTGAAAAGAATTAGTGAAGGGGGAAACCAACAAGCGAATATGGCAGCATTGTTAGGTAGTTCTTCGGATACATCCTATTCAAGAATGACTTCTCTCGGTGGCTCTACGCAGTTTCATAACAATCCTATCAAATTCTTTGCATCTGGTGGTAGTATGAGTAGTAATGTGAATCTGCGATTCAACACTCCTACTAATGTGAATATGCATCGATTCTCTCGTGGAACTCCTCAGTTGAATAACACATTAAACAACTCAACACATGATCAGCTAAAGTTCCAATCAGCCATAACTCGTGACAATCTGAAGCCGATTTCTTCTGAAGGGCTAGATCAATTGCTACGCAGTAATAAAGGTATTACTGTTAGTCCTGATATTCAAAACATGATCAATAAGCTTCCAGATTATTATAAACCAAAAGTAGCTGAAGGATACAAAAATTTAGCCTCTCAGAATTCGCAGTTTCTTTCTGTACTTGAAAACCGAAGGCGCAACGGTATTTTGTCAAACCCTATGCAATTACCTGGAACAAACTCTTATCTTCCAAGAGAAGGTTTCGTCCATGGTTCTGCGTCTCATAAAGATAACCGAAATGCTGCTATACCTCATACCGAACCACATGAATTCAGCAATATTAATGTGCCATTTCAAGGTTGGGATAATAATCATGATGGAAGTTACCATTCTTCTCATGTGGTTGGAAGTTCAATAGGCTCAATGATTCCTCCTATGGATGCTGTTGTACCAGAAGAAAACTTGGACTATATGAAGCGTGATCGCACCGCGGAGCTAACAGAAGGGTCGTCATTCAAACCACAACAGGCATATATGATGAACAACCAGATGAAGTTTCAAAACAGTGGAGTCTCTAGTAATCATGGTTCAGTCGAAGACGCTGTCCGTGACATGATCAAGCTCAAGCAGAAGCAATTGTATGATAATTAA 1686 0.4004 MNDLRDKFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQTAITALNLLRENKNNYDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVLKGITHGACDYLLKPVILKEVQTIWQHVIRKKKTNRRRNHDAPNSDSGNGIDSAVTGNSDQNERPSRKRKEKNEDDADEEDEDDHDNDDPTAQKKARVVWTPSLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISEGGNQQANMAALLGSSSDTSYSRMTSLGGSTQFHNNPIKFFASGGSMSSNVNLRFNTPTNVNMHRFSRGTPQLNNTLNNSTHDQLKFQSAITRDNLKPISSEGLDQLLRSNKGITVSPDIQNMINKLPDYYKPKVAEGYKNLASQNSQFLSVLENRRRNGILSNPMQLPGTNSYLPREGFVHGSASHKDNRNAAIPHTEPHEFSNINVPFQGWDNNHDGSYHSSHVVGSSIGSMIPPMDAVVPEENLDYMKRDRTAELTEGSSFKPQQAYMMNNQMKFQNSGVSSNHGSVEDAVRDMIKLKQKQLYDN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02011 561 Gene3D - 11 144 - -
Trre3g02011 561 SUPERFAMILY CheY-like 11 136 IPR011006 -
Trre3g02011 561 MobiDBLite consensus disorder prediction 143 160 - -
Trre3g02011 561 SUPERFAMILY Homeodomain-like 192 251 IPR009057 -
Trre3g02011 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 325 IPR045279 GO:0009736
Trre3g02011 561 MobiDBLite consensus disorder prediction 131 192 - -
Trre3g02011 561 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 247 IPR006447 GO:0003677
Trre3g02011 561 PIRSF RR_ARR_type-B 1 561 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre3g02011 561 SMART REC_2 12 124 IPR001789 GO:0000160
Trre3g02011 561 Gene3D - 190 253 - -
Trre3g02011 561 CDD REC_typeB_ARR-like 14 128 - -
Trre3g02011 561 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Trre3g02011 561 FunFam Two-component response regulator 190 253 - -
Trre3g02011 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Trre3g02011 561 Pfam Response regulator receiver domain 14 120 IPR001789 GO:0000160
Trre3g02011 561 Pfam Myb-like DNA-binding domain 196 246 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02011 Trre-Chr3 17638308 17641738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02011 6 334 Response Regulator Gene Family AT2G25180 56.932 7.16e-111 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre3g02011 Response_reg 2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02011 - K14491 tpra:123915626 861.677