Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02009 ATGGCATCAAGAATGAAAATATTAACACTTTTTCTTTTGTGCTTCTTCTCTTCTATTGTATTAGTCTTTTGCAATGAAAATCAAGTAACCACTTTGAAAGTGCTTTTAGAAGTGAAATCTTCTTTTGTAAAAGACCCTGAAAATGTTCTCATTGATTGGTCAGAAAACAATACTGATTATTGTACTTGGAGAGGCATTTCTTGTGACTCGGTACATGGTGTGGTTGGACTCAACCTGTCTTACTCGTCACTCACTGGGTCAATTTCACCATCAATCGGTTTTTTACAAAATCTACTTCACCTTGATCTTTCATCTAACCATCTTGTGGGTCCCATTCCACCTTCTCTATCCAATCTCACTAAATTAGAATCTTTGCTTCTCTTTTCCAACCAACTCACTAACCACATTCCAAACGAGTTAGGCTTGTTACTGAGTCTCCGAGTTTTACGACTCGGTGACAATGAACTCAGTAGCGAAATTCCTTCTTCTTTAGGCAATTTGATCAACCTTGTCAGCCTTGGTTTAGCTTCATGTAAACTCACCGGTTCGATTCCATCTCAACTCGGTCAACTCACTGAGTTACAAAATTTGATCCTGCAAGACAATGAGTTAACAGGTCCGATTCCGTCCGAGTTAGGAAACTGTTCAAACCTCATAATCTTCTCTGCAGCAGACAACAAACTCAATGGAACAATCCCAACTCAACTGAGTCAACTCAAAAACCTCCAAGTTCTCAACTTTGCCAACAACACTTTAACAGGGGAAATCCCGAGTCAACTCGGTCAAATGAAAGAGCTTAATTACCTCAATTTAATGGAAAACAAACTCGAGGGTCACATTCCACCATCTTTATCTCAATTGGGTAACCTTCAAAATCTTGACTTGTCAATGAACAAATTCAATGGAGGAATTCCAAAAGAGTTCACAAACATGCATCAGTTGAAATACTTAGTTCTTTCTGGAAACCCTTTATATGGAACAATTCCACCAACATTATGTTACAATGCAACAAATTTGGAACATTTAATGATATCTATGAGTGGACTTTATGGTAAAATTCCATCTGAATTGAGTCAATGTAAATCATTGAAGCAAATTGATTTATCAAACAATTCTCTCAATGGAACAATACCTATTGAGATTTATAGTTTGGTAAATTTAACTGATCTTATGCTTCATAACAATAGTTTAATTGGTTCAATTTCATTTAACATAGGGAATTTAACCAACATGCAAACACTTGCATTGTATCATAATAAGTTTCAAGGTGTTTTGCCTAAAGAAATTGGAAAGCTTGGAAAGTTGGAAATTTTGTATCTTTATGATAATCAATTTTCTGGTGAGATACCTTGGGAAATTGGTAATTGTTCAAGATTACAAATGGTTGATTTTTTTGGTAACCATTTTGGTGGAAGAATTCCAATTAGTATTGGAAGGTTAAAAGATTTGAATTTTCTTCATCTTAGGCAAAATGAGTTTGTTGGTGAAATTCCAGCTACACTTGGGAACTGTCATAAGCTGAATGTTCTTGATTTGGCAGATAATAAGCTCTCTGGTGGAATTCCTGCAACATTTGGTTATCTTAAAGATTTGAAGTTGTTTATGCTTTACAATAATTCTCTTGAAGGTGGTATTCCTCGACAAATGGCGAATGTAGCAAACTTGACAAGAATTAATTTTTCGAATAATAGGTTGAATGGAAGTTTGGTTCCATTGTGTAGCTCTAGAGATTTTCTTTCTTTTGATGTTACAGGTAATGAATTTGATGGTGAAATTCCTTCAAATTTGGGAAACTCTTTGTCTCTTGATAGGTTAAGATTAGGAGATAACAAGTTTTCCGGTGAAATTCCGAGGACATTGGGGAAAATCACTGATTTGTCATTTTTAGATCTTTCGGGAAATTCGCTCGTTGGACCAATACCAGGTGAACTATCTTTGTGTAGTAAATTAGCTTCTGTTGATTTAAGCAATAATCTTCTTTCTGGTCATATACCATTATGGCTTGGAAATTTGCCTAAGTTAGGAAAACTTAATCTTGCTTTTAATCAATTTTCTGGTCCTTTTCCACTGAGATTATTCAAGTTACCTATGTTGTTGATTCTTTCCTTGAATAACAATTCTCTTAATGGTAGTCTTCCAAATGGTATCGGCGATCTTGAATCGCTTAATGTACTAAGACTTGACCATAATAATTTTAGTGGACCAATCCCTCATGAAATAGGTAAGTTGAGAAATCTTTATGAGCTCAATCTCTCTAGAAATGTTTTCAGCGGTGACATACCGGATGAGATCGGAAATCTTCAAAATCTTCAAGTCATTTTAGACCTCAGTTACAATAATCTCTCTGGTCAGATTCCATCTTCTATTGGCACATTGGCGAAATTGGAAGCACTTGACTTATCTCACAATCAACTCGCCGGTGTAGTTCCTCCAAACATCGGCGAAATGATTAGCTTGGAAAAGCTTAATGTCTCTTATAATAGCTTTCAAGGTGCATTGGATAAGAAGTTCTCTCGCTGGCCATACGACACGTTTGTAGGAAACATTCATCTTTGTGGAGCCTCTCTCGGTAGCTGCAACCACAGTGGAGCTTCTCGAAATAAGCTATCACGGTTAAGTGAGACATCGGTTATCATAATCTCTGCCATTTCAACTCTAGCTGCAATTGCACTACTTATTCTTGCAGTAAAAATCTTCTTGAGAAATAGGCAAGATTTTTTGAAGAAAGACAATGAATTGGCCCTTGTTTTCTCCTCCTCTTCGTCAAAAGCGCAGAAACGGCCATTGTTTCCTACAGGTGGACGGCGAGAATTTAGATGGGAAGACATCATGGAAGCAACAAACAATTTGAGTGATGAATTCATAATCGGCTCCGGAGGTTCCGGAACAGTCTACAGAGTTGAATTGCCAACCGGCGAAATCGTAGCTGCCAAGAGAATTTCATTGAAAGATGAATATCTCTTACATAAAAGCTTTCTAAGAGAAGTGAAGACATTAGGGAGAATTAAGCATAGACATTTGGTGAAACTAATTGGTTGTTGTAGCAATAGAAACAAAGGAAATGCTATCATTGAGAGTCATGATTCTAATACTGAGTCTACTTCTTGTTTTGCTGGATCTTATGGTTACATTGCTCCAGAGTTTGGATACACTCTAAAGTCAACAGAGAAAAGTGATGTTTATAGCATGGGAATTGTGTTTATGGAACTTGTTAGTGGTAAATTACCAACTGATGCATTATTTAGAGGAGGTATAGACATGGTGAAATGGGTGGAGATGCATATTGACAAGAAAGGAATTGAAAATGAAGAACTTATAGATTTTGAGCTCAAACCACTTTTACCTTGTGAAGAGTTTTGCTGCATTTCAAGTTCTTGA 3378 0.3644 MASRMKILTLFLLCFFSSIVLVFCNENQVTTLKVLLEVKSSFVKDPENVLIDWSENNTDYCTWRGISCDSVHGVVGLNLSYSSLTGSISPSIGFLQNLLHLDLSSNHLVGPIPPSLSNLTKLESLLLFSNQLTNHIPNELGLLLSLRVLRLGDNELSSEIPSSLGNLINLVSLGLASCKLTGSIPSQLGQLTELQNLILQDNELTGPIPSELGNCSNLIIFSAADNKLNGTIPTQLSQLKNLQVLNFANNTLTGEIPSQLGQMKELNYLNLMENKLEGHIPPSLSQLGNLQNLDLSMNKFNGGIPKEFTNMHQLKYLVLSGNPLYGTIPPTLCYNATNLEHLMISMSGLYGKIPSELSQCKSLKQIDLSNNSLNGTIPIEIYSLVNLTDLMLHNNSLIGSISFNIGNLTNMQTLALYHNKFQGVLPKEIGKLGKLEILYLYDNQFSGEIPWEIGNCSRLQMVDFFGNHFGGRIPISIGRLKDLNFLHLRQNEFVGEIPATLGNCHKLNVLDLADNKLSGGIPATFGYLKDLKLFMLYNNSLEGGIPRQMANVANLTRINFSNNRLNGSLVPLCSSRDFLSFDVTGNEFDGEIPSNLGNSLSLDRLRLGDNKFSGEIPRTLGKITDLSFLDLSGNSLVGPIPGELSLCSKLASVDLSNNLLSGHIPLWLGNLPKLGKLNLAFNQFSGPFPLRLFKLPMLLILSLNNNSLNGSLPNGIGDLESLNVLRLDHNNFSGPIPHEIGKLRNLYELNLSRNVFSGDIPDEIGNLQNLQVILDLSYNNLSGQIPSSIGTLAKLEALDLSHNQLAGVVPPNIGEMISLEKLNVSYNSFQGALDKKFSRWPYDTFVGNIHLCGASLGSCNHSGASRNKLSRLSETSVIIISAISTLAAIALLILAVKIFLRNRQDFLKKDNELALVFSSSSSKAQKRPLFPTGGRREFRWEDIMEATNNLSDEFIIGSGGSGTVYRVELPTGEIVAAKRISLKDEYLLHKSFLREVKTLGRIKHRHLVKLIGCCSNRNKGNAIIESHDSNTESTSCFAGSYGYIAPEFGYTLKSTEKSDVYSMGIVFMELVSGKLPTDALFRGGIDMVKWVEMHIDKKGIENEELIDFELKPLLPCEEFCCISSS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02009 1125 Gene3D Transferase(Phosphotransferase) domain 1 1023 1098 - -
Trre3g02009 1125 Gene3D Ribonuclease Inhibitor 474 572 IPR032675 -
Trre3g02009 1125 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Trre3g02009 1125 Gene3D Ribonuclease Inhibitor 171 277 IPR032675 -
Trre3g02009 1125 SUPERFAMILY Protein kinase-like (PK-like) 924 1098 IPR011009 -
Trre3g02009 1125 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515
Trre3g02009 1125 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Trre3g02009 1125 SMART serkin_6 950 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02009 1125 Pfam Protein kinase domain 955 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02009 1125 SMART LRR_typ_2 695 719 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 95 118 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 119 142 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 432 456 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 743 767 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 480 504 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 792 816 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 384 408 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 311 335 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 143 167 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 239 263 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 191 215 IPR003591 -
Trre3g02009 1125 SMART LRR_typ_2 287 310 IPR003591 -
Trre3g02009 1125 FunFam Uncharacterized protein 380 473 - -
Trre3g02009 1125 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 186 - -
Trre3g02009 1125 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 571 863 - -
Trre3g02009 1125 SUPERFAMILY L domain-like 266 608 - -
Trre3g02009 1125 PRINTS Leucine-rich repeat signature 792 805 - -
Trre3g02009 1125 PRINTS Leucine-rich repeat signature 363 376 - -
Trre3g02009 1125 SUPERFAMILY L domain-like 32 330 - -
Trre3g02009 1125 Gene3D Ribonuclease Inhibitor 573 863 IPR032675 -
Trre3g02009 1125 Gene3D Ribonuclease Inhibitor 278 378 IPR032675 -
Trre3g02009 1125 Gene3D Ribonuclease Inhibitor 379 473 IPR032675 -
Trre3g02009 1125 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 335 674 - -
Trre3g02009 1125 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 281 379 - -
Trre3g02009 1125 Pfam Leucine rich repeat 266 324 IPR001611 GO:0005515
Trre3g02009 1125 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Trre3g02009 1125 Pfam Leucine rich repeat 744 805 IPR001611 GO:0005515
Trre3g02009 1125 ProSitePatterns Protein kinases ATP-binding region signature. 956 978 IPR017441 GO:0005524
Trre3g02009 1125 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 474 570 - -
Trre3g02009 1125 Gene3D Phosphorylase Kinase; domain 1 913 1022 - -
Trre3g02009 1125 SUPERFAMILY L domain-like 571 850 - -
Trre3g02009 1125 ProSiteProfiles Protein kinase domain profile. 950 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02009 1125 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02009 Trre-Chr3 17616073 17620184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02009 48 596 Receptor kinase-like Gene Family AT5G56040 35.531 5.30e-97 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g02009 Pkinase 1.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02009 - - gmx:100785174 1360.9