Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02008 ATGGCATCAAGAATGAAAATATTAACACTTTTTCTTTTGTGCTTCTTCTCTTCTATTGTATTAGTCTTTTGCAATGAAAATCAAGTAACCACTTTGAAAGTGCTTTTAGAAGTGAAATCTTCTTTTGTAAAAGACCCTGAAAATGTTCTCATTGATTGGTCAGAAAACAATACTGATTATTGTACTTGGAGAGGCATTTCTTGTGACTCGGTACATGGTGTGGTTGGACTCAACCTGTCTTACTCGTCACTCACTGGGTCAATTTCACCATCAATCGGTTTTTTACAAAATCTACTTCACCTTGATCTTTCATCTAACCATCTTGTGGGTCCCATTCCACCTTCTCTATCCAATCTCACTAAATTAGAATCTTTGCTTCTCTTTTCCAACCAACTCACTAACCACATTCCAAACGAGTTAGGCTTGTTACTGAGTCTCCGAGTTTTACGACTCGGTGACAATGAACTCAGTAGCGAAATTCCTTCTTCTTTAGGCAATTTGATCAACCTTGTCAGCCTTGGTTTAGCTTCATGTAAACTCACCGGTTCGATTCCATCTCAACTCGGTCAACTCACTGAGTTACAAAATTTGATCCTGCAAGACAATGAGTTAACAGGTCCGATTCCGTCCGAGTTAGGAAACTGTTCAAACCTCATAATCTTCTCTGCAGCAGACAACAAACTCAATGGAACAATCCCAACTCAACTGAGTCAACTCAAAAACCTCCAAGTTCTCAACTTTGCCAACAACACTTTAACAGGGGAAATCCCGAGTCAACTCGGTCAAATGAAAGAGCTTAATTACCTCAATTTAATGGAAAACAAACTCGAGGGTCACATTCCACCATCTTTATCTCAATTGGGTAACCTTCAAAATCTTGACTTGTCAATGAACAAATTCAATGGAGGAATTCCAAAAGAGTTCACAAACATGCATCAGTTGAAATACTTAGTTCTTTCTGGAAACCCTTTATATGGAACAATTCCACCAACATTATGTTACAATGCAACAAATTTGGAACATTTAATGATATCTATGAGTGGACTTTATGGTAAAATTCCATCTGAATTGAGTCAATGTAAATCATTGAAGCAAATTGATTTATCAAACAATTCTCTCAATGGAACAATACCTATTGAGATTTATAGTTTGGTAAATTTAACTGATCTTATGCTTCATAACAATAGTTTAATTGGTTCAATTTCATTTAACATAGGGAATTTAACCAACATGCAAACACTTGCATTGTATCATAATAAGTTTCAAGGTGTTTTGCCTAAAGAAATTGGAAAGCTTGGAAAGTTGGAAATTTTGTATCTTTATGATAATCAATTTTCTGGTGAGATACCTTGGGAAATTGGTAATTGTTCAAGATTACAAATGGTTGATTTTTTTGGTAACCATTTTGGTGGAAGAATTCCAATTAGTATTGGAAGGTTAAAAGATTTGAATTTTCTTCATCTTAGGCAAAATGAGTTTGTTGGTGAAATTCCAGCTACACTTGGGAACTGTCATAAGCTGAATGTTCTTGATTTGGCAGATAATAAGCTCTCTGGTGGAATTCCTGCAACATTTGGTTATCTTAAAGATTTGAAGTTGTTTATGCTTTACAATAATTCTCTTGAAGGTGGTATTCCTCGACAAATGGCGAATGTAGCAAACTTGACAAGAATTAATTTTTCGAATAATAGGTTGAATGGAAGTTTGGTTCCATTGTGTAGCTCTAGAGATTTTCTTTCTTTTGATGTTACAGGTAATGAATTTGATGGTGAAATTCCTTCAAATTTGGGAAACTCTTTGTCTCTTGATAGGTTAAGATTAGGAGATAACAAGTTTTCCGGTGAAATTCCGAGGACATTGGGGAAAATCACTGATTTGTCATTTTTAGATCTTTCGGGAAATTCGCTCGTTGGACCAATACCAGGTGAACTATCTTTGTGTAGTAAATTAGCTTCTGTTGATTTAAGCAATAATCTTCTTTCTGGTCATATACCATTATGGCTTGGAAATTTGCCTAAGTTAGGAAAACTTAATCTTGCTTTTAATCAATTTTCTGGTCCTTTTCCACTGAGATTATTCAAGTTACCTATGTTGTTGATTCTTTCCTTGAATAACAATTCTCTTAATGGTAGTCTTCCAAATGGTATCGGCGATCTTGAATCGCTTAATGTACTAAGACTTGACCATAATAATTTTAGTGGACCAATCCCTCATGAAATAGGTAAGTTGAGAAATCTTTATGAGCTCAATCTCTCTAGAAATGTTTTCAGCGGTGACATACCGGATGAGATCGGAAATCTTCAAAATCTTCAAGTCATTTTAGACCTCAGTTACAATAATCTCTCTGGTCAGATTCCATCTTCTATTGGCACATTGGCGAAATTGGAAGCACTTGACTTATCTCACAATCAACTCGCCGGTGTAGTTCCTCCAAACATCGGCGAAATGATTAGCTTGGAAAAGCTTAATGTCTCTTATAATAGCTTTCAAGGTGCATTGGATAAGAAGTTCTCTCGCTGGCCATACGACACGTTTGTAGGAAACATTCATCTTTGTGGAGCCTCTCTCGGTAGCTGCAACCACAGTGGAGCTTCTCGAAATAAGCTATCACGGTTAAGTGAGACATCGGTTATCATAATCTCTGCCATTTCAACTCTAGCTGCAATTGCACTACTTATTCTTGCAGTAAAAATCTTCTTGAGAAATAGGCAAGATTTTTTGAAGAAAGACAATGAATTGGCCCTTGTTTTCTCCTCCTCTTCGTCAAAAGCGCAGAAACGGCCATTGTTTCCTACAGGTGGACGGCGAGAATTTAGATGGGAAGACATCATGGAAGCAACAAACAATTTGAGTGATGAATTCATAATCGGCTCCGGAGGTTCCGGAACAGTCTACAGAGTTGAATTGCCAACCGGCGAAATCGTAGCTGCCAAGAGAATTTCATTGAAAGATGAATATCTCTTACATAAAAGCTTTCTAAGAGAAGTGAAGACATTAGGGAGAATTAAGCATAGACATTTGGTGAAACTAATTGGTTGTTGTAGCAATAGAAACAAAGGAAATGGTTGTAACCTATTGATATATGAGTATATGGAAAATGGAAGTGTGTGGGATTGGTTACATGGAAATGCTCTAAAGTTAAAGAGAAACCTTGATTGGGAAACAAGGTTCAAAATTGCTTTAGGGTTAGCTCAAGGAATGGAGTACCTTCATCATGATTGTGTGCCAAAGATCATTCATAGGGACATCAAATCTAGCAACATTTTGTTAGATTCTAATATGGATGCACATTTGGGAGATTTTGGATTGGCAAAAGCTATCATTGAGAGTCATGATTCTAATACTGAGTCTACTTCTTGTTTTGCTGGATCTTATGGTTACATTGCTCCAGAGTTTGGATACACTCTAAAGTCAACAGAGAAAAGTGATGTTTATAGCATGGGAATTGTGTTTATGGAACTTGTTAGTGGTAAATTACCAACTGATGCATTATTTAGAGGAGGTATAGACATGAGTTTTGCTGCATTTCAAGTTCTTGAGATAGCTTTACAATGCACAAAAACTGCACCACAAGAGAGACCATCATCAAGACAAGTATGTGATCTTCTTCTACATGTTTCCAAGAATAAAAAAGTGGAGTTTAAGAAGATGAATTTGGATTCCAACAACTGA 3672 0.3641 MASRMKILTLFLLCFFSSIVLVFCNENQVTTLKVLLEVKSSFVKDPENVLIDWSENNTDYCTWRGISCDSVHGVVGLNLSYSSLTGSISPSIGFLQNLLHLDLSSNHLVGPIPPSLSNLTKLESLLLFSNQLTNHIPNELGLLLSLRVLRLGDNELSSEIPSSLGNLINLVSLGLASCKLTGSIPSQLGQLTELQNLILQDNELTGPIPSELGNCSNLIIFSAADNKLNGTIPTQLSQLKNLQVLNFANNTLTGEIPSQLGQMKELNYLNLMENKLEGHIPPSLSQLGNLQNLDLSMNKFNGGIPKEFTNMHQLKYLVLSGNPLYGTIPPTLCYNATNLEHLMISMSGLYGKIPSELSQCKSLKQIDLSNNSLNGTIPIEIYSLVNLTDLMLHNNSLIGSISFNIGNLTNMQTLALYHNKFQGVLPKEIGKLGKLEILYLYDNQFSGEIPWEIGNCSRLQMVDFFGNHFGGRIPISIGRLKDLNFLHLRQNEFVGEIPATLGNCHKLNVLDLADNKLSGGIPATFGYLKDLKLFMLYNNSLEGGIPRQMANVANLTRINFSNNRLNGSLVPLCSSRDFLSFDVTGNEFDGEIPSNLGNSLSLDRLRLGDNKFSGEIPRTLGKITDLSFLDLSGNSLVGPIPGELSLCSKLASVDLSNNLLSGHIPLWLGNLPKLGKLNLAFNQFSGPFPLRLFKLPMLLILSLNNNSLNGSLPNGIGDLESLNVLRLDHNNFSGPIPHEIGKLRNLYELNLSRNVFSGDIPDEIGNLQNLQVILDLSYNNLSGQIPSSIGTLAKLEALDLSHNQLAGVVPPNIGEMISLEKLNVSYNSFQGALDKKFSRWPYDTFVGNIHLCGASLGSCNHSGASRNKLSRLSETSVIIISAISTLAAIALLILAVKIFLRNRQDFLKKDNELALVFSSSSSKAQKRPLFPTGGRREFRWEDIMEATNNLSDEFIIGSGGSGTVYRVELPTGEIVAAKRISLKDEYLLHKSFLREVKTLGRIKHRHLVKLIGCCSNRNKGNGCNLLIYEYMENGSVWDWLHGNALKLKRNLDWETRFKIALGLAQGMEYLHHDCVPKIIHRDIKSSNILLDSNMDAHLGDFGLAKAIIESHDSNTESTSCFAGSYGYIAPEFGYTLKSTEKSDVYSMGIVFMELVSGKLPTDALFRGGIDMSFAAFQVLEIALQCTKTAPQERPSSRQVCDLLLHVSKNKKVEFKKMNLDSNN 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02008 1223 FunFam Uncharacterized protein 380 473 - -
Trre3g02008 1223 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Trre3g02008 1223 SUPERFAMILY L domain-like 32 329 - -
Trre3g02008 1223 SUPERFAMILY L domain-like 280 611 - -
Trre3g02008 1223 Gene3D Ribonuclease Inhibitor 571 863 IPR032675 -
Trre3g02008 1223 Pfam Protein kinase domain 955 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02008 1223 Pfam Leucine rich repeat 744 805 IPR001611 GO:0005515
Trre3g02008 1223 Pfam Leucine rich repeat 266 324 IPR001611 GO:0005515
Trre3g02008 1223 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Trre3g02008 1223 SUPERFAMILY L domain-like 572 849 - -
Trre3g02008 1223 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 186 - -
Trre3g02008 1223 Gene3D Ribonuclease Inhibitor 178 274 IPR032675 -
Trre3g02008 1223 ProSiteProfiles Protein kinase domain profile. 950 1208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02008 1223 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 620 1204 - -
Trre3g02008 1223 SMART serkin_6 950 1208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02008 1223 Gene3D Ribonuclease Inhibitor 275 375 IPR032675 -
Trre3g02008 1223 ProSitePatterns Protein kinases ATP-binding region signature. 956 978 IPR017441 GO:0005524
Trre3g02008 1223 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515
Trre3g02008 1223 Gene3D Phosphorylase Kinase; domain 1 913 1030 - -
Trre3g02008 1223 FunFam Protein kinase superfamily protein 1031 1106 - -
Trre3g02008 1223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1078 1090 IPR008271 GO:0004672|GO:0006468
Trre3g02008 1223 Gene3D Ribonuclease Inhibitor 376 471 IPR032675 -
Trre3g02008 1223 Gene3D Ribonuclease Inhibitor 472 570 IPR032675 -
Trre3g02008 1223 SMART LRR_typ_2 695 719 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 119 142 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 95 118 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 432 456 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 743 767 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 480 504 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 792 816 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 384 408 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 311 335 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 143 167 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 239 263 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 287 310 IPR003591 -
Trre3g02008 1223 SMART LRR_typ_2 191 215 IPR003591 -
Trre3g02008 1223 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 280 - -
Trre3g02008 1223 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 571 863 - -
Trre3g02008 1223 Gene3D Transferase(Phosphotransferase) domain 1 1031 1222 - -
Trre3g02008 1223 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 281 379 - -
Trre3g02008 1223 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Trre3g02008 1223 SUPERFAMILY Protein kinase-like (PK-like) 928 1203 IPR011009 -
Trre3g02008 1223 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 913 1030 - -
Trre3g02008 1223 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 474 570 - -
Trre3g02008 1223 PRINTS Leucine-rich repeat signature 792 805 - -
Trre3g02008 1223 PRINTS Leucine-rich repeat signature 363 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02008 Trre-Chr3 17615940 17620184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02008 48 596 Receptor kinase-like Gene Family AT5G56040 35.531 3.24e-97 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g02008 Pkinase 8.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02008 - - gmx:100819046 1664.82