Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02007 ATGGCTTCTTCTGGAGTTGAAATTGCTTCTTCTGCACCGTTTGATTGTGTTTTAAGGGACCGTAATCATCGCGATGTATGCAGAGAAAGTAGCAAAGTTAAAGCTACAAATGTTGCTTTTCAAAGGAACATTAAGAATTTTGTCATTGATCATCTTAACACGTGCATTTCCATTTCTGATTCTTCAACAACAAATGAAAACAACATCAATAGCAACAACAACAATGAAAGTCAAATGAATAACAATAAACTTGCGAGGATTCGTTTGACAAGAAACAATCATAACAATAATAAGGGTGATAAAGATGAATCAGCTTTGGTTTCAATGATTAGCCCGAAACATTCGCGGCTTCTTGATCGATGGGCTGCGAAGCAAGCTCGTGAGATAGTTTCAACATTAGAGAATGAAGCTGAGTTGTTGTCTATTGAAGAAAACACAAACAAAAACAACAACATTCATGCATCTTCGGAGACGTCTAGTTCTATCTCGGATGAATGTTCTTCTGAGATATCGAAACTTGGTGCATCTTCCCTTGTACAGATATGGGAAAAGAGGCTTAACAAATCGAGTGGATCGAAACCGAGCACTCCAATGGAGAAAACAAGTTTGAATGATGGTACAAGTGCTACTTGCAACAATGAGAATGAGTTTGTTGTGGAAGAACAAAGAGGGCCGGAATTAGGATTGTGTTTTGAAGGACAGTTATCGGGGAACGAAGAATCGTTTTCAATTTCTTCGTTCCCTGATTGGGAATCTGATAAGACAGGTGATCAAAGTAGGTCTTGTTCAAGAGATCAAAGTAGGTGGTGCTCGTCGGAGAGTGATAGAGTCAGTGTTGCGGAAATCATAAAAAAACTAACTGCGAGTCAAACGCAGAGCCCATCTTCGTATTTTGCCGATGAAAATGACCATGAAGTGAGTGGTAGTAGCACTAGGGAATGCTCTCCTTGTAGAGATTTTGTCCAAGAACTTCCAGATCAAAGAGCTTTTCCTCAGGTAACTTGTTTACCAAGAATTAGGGGGCGCCAAGCGTTCAATGATTTGCTTTTGCAGTTGGAGAATGATAGGCATGGTGAGCTTAAGAACCTGGCTGAGCGTGGAACGGTCTCCAAGTTCGCACAAAAAGGTCGCATTCAGGCATTGCTTCGACTTAAATTATTACAACGGGGCGTGGCAGCTAATACTCTATTACAGAAATCAACATCAACAGAAGTAAACAAACAAGTACAACCACAGGGATCTGCAATTATGCAACTAAGGGAAAAATTTAGCACTGCTGTTGAACAAAAAGGTACAGTCCAGACAGAAGTATCGAACACGCGAAATCCTTGCAAGGATATAGTGAACAACATCACACAATTGGAAAAATCTTCCATTTCTGCTCAAATGAGCAAAGACACAAGCAGTCAGGTTCCTCATGGTACTGCCAGTCACTCCTCGAAATCGACAGAAAATTCTGTGTCTCGAACTAGAGAAGAAGATGGTCCGAGTTCAAATGCCGTGTCTCAAGAAACATGTTTTAAAGCTCAGCGTGATTACTTCAAGGAAACCGCTGAACTAACTACAACGATGTCTGATTCAAATGCTAATGAGAAAGCTGAAGAGGAAAATAACCAGCAATATGATGAAACCAGTTATGGTTGTGCATTAGAAGAGGAAGGAAGTAACCAGAACTACGCTGAAAGCTGTTACGAAGAAGAGATAGTTGAAGAGATTTATGATGAAAATAATCATGACTGGATCAGTGAAATTTCTCGACCGAAGAGCTTTTGGGAAGAGAAAAGGCAAGCATGGTATAGAGAAATGCTTAACAATGGTTCTCCAAATAAGGATATTCAAGTGCTTCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGCGAAAAAATGGATAGATTGATGCAATCTCATAAAGGAACACAAACACATTTAGTGAATAATTGCGATGACGATGAAGACAATGAAGGGTTGATGGCATTTTTCCTAGAACGCCTGCATTCTGTAAGAACTCCTCAAGAAAATGGAATAGAGAGAACGGTAGACGAAGAAAAGGAAAGTGTAAATGAGGAAGAAGAAAACGAAGAGGAAGAAGCCGAGGAAGAGGATGAGGATGATGACGATGAGGATGAGAAAGAGCATGAAGAGGAGCTAGGAGGGGAGAGCTTGGTAAGTAGTTTGTATCATGAAGTTGGAGACTATTCTAATCGATCCTCATCATGGAATTATAGACACAACGAAACTGGTGATGATTTTGATAGAGTTGCTTCTACATCTCCACGACCTTATCAATCTCCGTCTTTCTATCATGATAGTCGGAGAACCTCCCCATCTACCAATCAACACTCCATTGAAATGGATCTCATATATGATATGAGAGGCTATATGGAGCAACTTCATCAAGAGATGACTGAACTAAGGAAATCAATAAAGAGTTGCTTGGATATGCAAATGCAGATGCAGTTACAACAATCCAATAACCAAAGGATGCAAACAGTTGAAAAAGAAGAAAAGAAGTCACAAAACAAGGCTGGTAAGAAAGGAAACTGCTGCATTTGCTATAAGATGAAAGTTGACTCAGTCCTATACAGGTGTGGACACATGTGTGCATGTCTGAAATGTGCAAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCAAGCTAAAATAGACGATGTTGTTCGAGTTTATGTCGATGCTTAG 2715 0.3982 MASSGVEIASSAPFDCVLRDRNHRDVCRESSKVKATNVAFQRNIKNFVIDHLNTCISISDSSTTNENNINSNNNNESQMNNNKLARIRLTRNNHNNNKGDKDESALVSMISPKHSRLLDRWAAKQAREIVSTLENEAELLSIEENTNKNNNIHASSETSSSISDECSSEISKLGASSLVQIWEKRLNKSSGSKPSTPMEKTSLNDGTSATCNNENEFVVEEQRGPELGLCFEGQLSGNEESFSISSFPDWESDKTGDQSRSCSRDQSRWCSSESDRVSVAEIIKKLTASQTQSPSSYFADENDHEVSGSSTRECSPCRDFVQELPDQRAFPQVTCLPRIRGRQAFNDLLLQLENDRHGELKNLAERGTVSKFAQKGRIQALLRLKLLQRGVAANTLLQKSTSTEVNKQVQPQGSAIMQLREKFSTAVEQKGTVQTEVSNTRNPCKDIVNNITQLEKSSISAQMSKDTSSQVPHGTASHSSKSTENSVSRTREEDGPSSNAVSQETCFKAQRDYFKETAELTTTMSDSNANEKAEEENNQQYDETSYGCALEEEGSNQNYAESCYEEEIVEEIYDENNHDWISEISRPKSFWEEKRQAWYREMLNNGSPNKDIQVLLERRTVSTFLSSDFREKMDRLMQSHKGTQTHLVNNCDDDEDNEGLMAFFLERLHSVRTPQENGIERTVDEEKESVNEEEENEEEEAEEEDEDDDDEDEKEHEEELGGESLVSSLYHEVGDYSNRSSSWNYRHNETGDDFDRVASTSPRPYQSPSFYHDSRRTSPSTNQHSIEMDLIYDMRGYMEQLHQEMTELRKSIKSCLDMQMQMQLQQSNNQRMQTVEKEEKKSQNKAGKKGNCCICYKMKVDSVLYRCGHMCACLKCANELQWNSGKCPICQAKIDDVVRVYVDA 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02007 904 MobiDBLite consensus disorder prediction 522 542 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 61 80 - -
Trre3g02007 904 ProSiteProfiles Zinc finger RING-type profile. 852 891 IPR001841 -
Trre3g02007 904 Coils Coil 676 711 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 293 314 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 749 782 - -
Trre3g02007 904 CDD mRING-HC-C3HC5_NEU1 849 901 - -
Trre3g02007 904 PANTHER BNAC05G24000D PROTEIN 1 903 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 457 484 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 457 505 - -
Trre3g02007 904 Coils Coil 123 143 - -
Trre3g02007 904 Pfam Zinc finger, C3HC4 type (RING finger) 849 897 - -
Trre3g02007 904 SUPERFAMILY RING/U-box 851 896 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 760 782 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 188 209 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 687 718 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 675 728 - -
Trre3g02007 904 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 824 903 IPR013083 -
Trre3g02007 904 Coils Coil 798 818 - -
Trre3g02007 904 MobiDBLite consensus disorder prediction 241 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02007 Trre-Chr3 17608630 17612793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02007 844 900 C3H Transcription Factor Family AT3G06140 35.088 4.71e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02007 - - mtr:25488200 1120.53