Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01956 ATGTTCATGGCTTGCTGCTTTAGTTTGAATGAAGAGGATGTTTTGAGTGGTTTTAGCAAAAAGGGATGTTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTGTTTTACATTCAATGAGATAAAATCTGCTACAAGGAACTTTCGTCCAAGTGGTCTACTTGGTAAAAGTATGTTTGGTTACGTATATAAGGGGTGGATCGATGAAAACACACTAGCCCCTACTAAACTAGGAACTGGTTTCGCCGTTGCTGTGAAGCAGCTTAGCCAAGAAAACAAGCTGGGACAAAGTGAATGGTTGAGAAAAATCAGTTACTTAGGACAGCTTCATCATCCAAATCTTGTGAGATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTTTTACCAAGGGAAATTTGGACAATCATTTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCTCTTGACGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAATGATACATGGAGGCTTCAAAACTTCTAAGATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGGAAAAATATGGATCAGATCATACGGTCGTAATGGATAGGGCATATCCAGAGATTTACTTAGCACGGGAGTTGATAGAAGCAGGTCATCTAAGCAAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTCCTCGAAATTATCTCAGGAAAACGTGGATTGGATTTAAACAGGCCATTTGTGGAACAAAATTTAGTTGAATGGGCAAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTCGTTTAGAAGGCCAATATTCGTCGGAAGAAGCAATGAAAGTAGGTCACATTGTAATTAAATGTCTGTCTCGAAGACCAGATTATAGACCAAACATAGATGAGGTGGTGAGATCATTGGAACAAGTTCAGGATTCCAATGACACAATTAGTGGAGTGGTCATATCTCAAGCAGTAGTGGTTTAG 1062 0.3861 MFMACCFSLNEEDVLSGFSKKGCCSSMTDSEIFQSNNLKCFTFNEIKSATRNFRPSGLLGKSMFGYVYKGWIDENTLAPTKLGTGFAVAVKQLSQENKLGQSEWLRKISYLGQLHHPNLVRLIGYCFEDNNRILVYEFFTKGNLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEMIHGGFKTSKIMIDSNYNAKLSDFGLEKYGSDHTVVMDRAYPEIYLARELIEAGHLSKKSDVYSFGVVLLEIISGKRGLDLNRPFVEQNLVEWAKPLLVSKHKISRAIDARLEGQYSSEEAMKVGHIVIKCLSRRPDYRPNIDEVVRSLEQVQDSNDTISGVVISQAVVV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01956 353 PANTHER OS01G0588500 PROTEIN-RELATED 28 336 - -
Trre3g01956 353 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 139 344 - -
Trre3g01956 353 Pfam Protein tyrosine and serine/threonine kinase 59 332 IPR001245 GO:0004672|GO:0006468
Trre3g01956 353 Gene3D Transferase(Phosphotransferase) domain 1 139 349 - -
Trre3g01956 353 Gene3D Phosphorylase Kinase; domain 1 24 138 - -
Trre3g01956 353 ProSiteProfiles Protein kinase domain profile. 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01956 353 FunFam Serine/threonine-protein kinase BIK1 21 138 - -
Trre3g01956 353 SUPERFAMILY Protein kinase-like (PK-like) 31 338 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01956 Trre-Chr3 16531778 16533494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01956 20 332 Receptor kinase-like Gene Family AT3G58690 40.000 4.37e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre3g01956 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01956 - - gmx:106795104 414.846