Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01910 ATGACTGAAGCTGCCACAAATAACAAAAAAAATCAGGTTTTGCACATTCCACCGGAAACTGCTCAGTATGTACTTAGAGGTAGGAAGAATATTACAATCAAAACTATGCACAATTTGAATGGAACCAATTTGACCATCACAACTTACATCACAACTTACACAAGGCCAAATGGAAGGAAGGATATGTACTTCACTGAAGGATGGTATGCATTCAAGAAAGCTAACAGACTTGAAAAGGGAGACAAGTTGGAATTTAAGCTTTCTGATCCACCTGAAGTTGTTCTTATCAACATTGTTCGCCACACCAATTGA 312 0.3782 MTEAATNNKKNQVLHIPPETAQYVLRGRKNITIKTMHNLNGTNLTITTYITTYTRPNGRKDMYFTEGWYAFKKANRLEKGDKLEFKLSDPPEVVLINIVRHTN 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01910 103 ProSiteProfiles B3 DNA-binding domain profile. 1 102 IPR003340 GO:0003677
Trre3g01910 103 Pfam B3 DNA binding domain 7 97 IPR003340 GO:0003677
Trre3g01910 103 CDD B3_DNA 14 100 IPR003340 GO:0003677
Trre3g01910 103 SUPERFAMILY DNA-binding pseudobarrel domain 9 94 IPR015300 -
Trre3g01910 103 Gene3D - 1 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01910 Trre-Chr3 15850713 15851121 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g01910 B3 2.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01910 - K21932 tpra:123909626 98.9821