Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01909 ATGTTTGGTTGGAAGAGGATAATGACTGAAGCTGCCACAAATAACAAAAAAAATCAGGTTTTGCACATTCCACCGGAAACTGCTCAGTATGTACTTAGAGGTAGGAAGAATATTACAATCAAAACTATGCACAATTTGAATGGAACCAATTTGACCATCACAACTTACATCACAACTTACACAAGGCCAAATGGAAGGAAGGATATGTACTTCACTGAAGGATGGTATGCATTCAAGAAAGCTAACAGACTTGAAAAGGGAGACAAGTTGGAATTTAAGCTTTCTGATCCACCTGAAGTTGTTCTTATCAACATTGTTCGCCACACCAATTGA 333 0.3784 MFGWKRIMTEAATNNKKNQVLHIPPETAQYVLRGRKNITIKTMHNLNGTNLTITTYITTYTRPNGRKDMYFTEGWYAFKKANRLEKGDKLEFKLSDPPEVVLINIVRHTN 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01909 110 Pfam B3 DNA binding domain 14 103 IPR003340 GO:0003677
Trre3g01909 110 CDD B3_DNA 21 107 IPR003340 GO:0003677
Trre3g01909 110 Gene3D - 4 110 IPR015300 -
Trre3g01909 110 ProSiteProfiles B3 DNA-binding domain profile. 6 109 IPR003340 GO:0003677
Trre3g01909 110 SUPERFAMILY DNA-binding pseudobarrel domain 11 101 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01909 Trre-Chr3 15850692 15851121 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g01909 B3 2.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01909 - K21932 tpra:123909626 109.768