Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01903 ATGTATCAGTATGATTGCAGGGCATACCCACGTATGGTTTCTTCCAATGATTTTAACACACAAGATTTTTCATCTGAAAAATGTTTCAATATCCAATTTGAATACAGAGTTATGTGTGTTCCAACTGATACACAGTTTCAATCTTTTGGAGACAACATTCAACGTCACACTCTTAATAATGTGTCAATGGATAAAATTGTGCAACCAGATACCTTTCTCTCATGGTTTTCTCAAGTAAATATTCCTGCAGATGCTTTTAACATGGTGGCTAAAGAAATCTTGGAATGTGCTTATGATATGATTTATGATGACAAATATAAGAATACAAGAGTTCTTACTATTCATGTTGATTTTGTGGTTGGTGATGATTGTGAAGATGAAGAGAACCCTAATTTTGATGAGGATGAAGAGGTAGTAATAGAGGAAGAAGAAGAAGAAGAAAATGGGTTGGTTCATGATGTTGCTAGGGCTATTGAAGGTGAAGCTGATGAAGATTATTATTATTATGAAGTTGATTATGGTTTGGAAGAGGAAATTATGGCTGAAGAAGAACATAACTGGTTTACTCCTGCGGCTATGTTGCGTGTTGAAGAATTGGATAGGGTAAACGTTGAAGAAGCGACTCAATGTACTATTTGTTTTGAAGATTTTAATGTTGGTGTTAGATTGCCATGTTCACACATGTTTCATGTGAATTGCATTGAAAATTGGTTGGTGATAGGCAACTCTTGTCCTTTGTGTAGGTTTCAATTGTAG 756 0.3492 MYQYDCRAYPRMVSSNDFNTQDFSSEKCFNIQFEYRVMCVPTDTQFQSFGDNIQRHTLNNVSMDKIVQPDTFLSWFSQVNIPADAFNMVAKEILECAYDMIYDDKYKNTRVLTIHVDFVVGDDCEDEENPNFDEDEEVVIEEEEEEENGLVHDVARAIEGEADEDYYYYEVDYGLEEEIMAEEEHNWFTPAAMLRVEELDRVNVEEATQCTICFEDFNVGVRLPCSHMFHVNCIENWLVIGNSCPLCRFQL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01903 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 109 251 - -
Trre3g01903 251 SMART ring_2 210 247 IPR001841 -
Trre3g01903 251 SUPERFAMILY RING/U-box 209 250 - -
Trre3g01903 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Trre3g01903 251 SMART ringv_2 209 248 IPR011016 GO:0008270
Trre3g01903 251 ProSiteProfiles Zinc finger RING-type profile. 210 248 IPR001841 -
Trre3g01903 251 Pfam Ring finger domain 209 248 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01903 Trre-Chr3 15762693 15763448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01903 189 251 C3H Transcription Factor Family AT2G03000 42.424 5.33e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01903 - - tpra:123916835 221.861