Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01874 ATGATCAACATTTCCTTCTATAACATTCCAATCGTGAACGGAGTTGTAACAAGGACAAATGAAGTTCGACTCGAGCTTCTCAAAGGAACTTTCAAATGCCTGGAATGTGGTGGGATTATAAAGAATGTTAAACAACAATTCAAGTATACCGAGCCAACATATGTCTATATGCAACCTGTAACAATCGAACAAAGTGGGCGCTATTGGGCGAAGAGAGCAAATTTACTGATTGGCAAAAGGTCAGAACTCAGAAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGCTGTTTGCTTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTCGAACATGCCAGGGCTGGGTTATTGTTGTTATACCAGATATATTGGCATTGGTGTGCCCCGGAGAGAGGTCAGAATGCCGTAGGGAAGCTTCTCAACGCAAGGGTTCCACATCTGGAAACGAAGGTGACGGGCCTTAAGGCTTTGGGAGTCAGAGATGTCTTCTATAATCTAACTTTTATTGCAAATTCTGTGCAGATTTGTGATGGTAGAAAAGAAACAGACATCAGGAACAGAAAGAAGGATTCAGATGAAGATGATCAGCAATTTACTGCACAGGAACTGGATAAAGTTCAACGAATGAGGAACACTCGAGGTTTCTTTATCAAACTTGTTGATAGTATTGCTCTGGAGGTTTGTCGTCATCGAGAAGTAAAGCGGGGAATCTGTCTTATTCTTGTTGGTGGTGTCCACATATCTATTTGTGCAAAGTCTCAATTTCTTAAGTATACTTCAAACATTGTTCCAAGATCTGTATACACATCAGGGAAATCATCATCTGCTGCCGGCCAGCTTGACTGCAACTGTTGCTTAGGAACCAGAAACTGA 879 0.4164 MINISFYNIPIVNGVVTRTNEVRLELLKGTFKCLECGGIIKNVKQQFKYTEPTYVYMQPVTIEQSGRYWAKRANLLIGKRSELRRMQETSKEIPAGCLLRSLDVILRHEIVEHARAGLLLLYQIYWHWCAPERGQNAVGKLLNARVPHLETKVTGLKALGVRDVFYNLTFIANSVQICDGRKETDIRNRKKDSDEDDQQFTAQELDKVQRMRNTRGFFIKLVDSIALEVCRHREVKRGICLILVGGVHISICAKSQFLKYTSNIVPRSVYTSGKSSSAAGQLDCNCCLGTRN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01874 292 Pfam MCM P-loop domain 252 280 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre3g01874 292 SUPERFAMILY Nucleic acid-binding proteins 11 117 IPR012340 -
Trre3g01874 292 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 280 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre3g01874 292 SMART mcm 7 292 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre3g01874 292 FunFam DNA helicase 25 54 - -
Trre3g01874 292 Gene3D - 25 79 - -
Trre3g01874 292 Gene3D - 12 117 IPR012340 -
Trre3g01874 292 Gene3D - 195 283 IPR027417 -
Trre3g01874 292 Pfam MCM OB domain 12 117 IPR033762 -
Trre3g01874 292 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 45 62 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre3g01874 292 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 101 112 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre3g01874 292 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 152 173 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre3g01874 292 ProSiteProfiles MCM family domain profile. 217 280 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01874 Trre-Chr3 15380165 15382600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01874 2 280 Core DNA Replication Machinery Family AT5G44635 50.760 7.76e-90 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01874 K02542 - gmx:100787290 283.108