Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01873 ATGCTTGCTGACAATGCCATTTGTTGCATTGATGAATTTGACAAGATGAACATCAGATATCTAGAGACATTTGCAATTCACAAGGCCATGGAACAGAACACTATTAGTATCACAAAAGCAGGAATACATGCGACACTTAATGCCCATATTTTCATTCTCGCCGCTGCCAATCCGGCTGGGGGACGGTACAATAAGTGTAAATCACCGAAGTACAATGTGGTTCTTCCACCAGCTATACTTCAAGGTTTGATCTTGTATACATTATGGTTGATGACCCGGATGAAACAATAG 291 0.4089 MLADNAICCIDEFDKMNIRYLETFAIHKAMEQNTISITKAGIHATLNAHIFILAAANPAGGRYNKCKSPKYNVVLPPAILQGLILYTLWLMTRMKQ 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01873 96 Gene3D - 1 93 IPR027417 -
Trre3g01873 96 ProSiteProfiles MCM family domain profile. 1 88 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre3g01873 96 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 81 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre3g01873 96 PRINTS Mini-chromosome maintenance (MCM) protein family signature 52 64 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre3g01873 96 PRINTS Mini-chromosome maintenance (MCM) protein family signature 28 41 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre3g01873 96 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 82 IPR027417 -
Trre3g01873 96 Pfam MCM P-loop domain 1 81 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01873 Trre-Chr3 15378753 15379197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01873 1 80 Core DNA Replication Machinery Family AT5G44635 75.000 1.58e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01873 K02542 - atr:18448940 119.398