Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01872 ATGGAACAGAACACTATTAGTATCACAAAAGCAGGAATACATGCGACACTTAATGCCCATATTTTCATTCTCGCCGCTGCCAATCCGGCTGGGGGACGCTATACTTCAAGGTTTGATCTTGTATACATTATGGTTGATGACCCGGATGAAACAATAGATGCCAACATATCTCAACAGATCATGAAACTTCATCAAAAGCATGATGATGCTCTTGATCCCGCATTCTCCACAGCAGAAGTAAAGTGTTATGTTGCCAATGCAAAAACTCTTAAACCAAAGAATATTTTGTAA 291 0.3952 MEQNTISITKAGIHATLNAHIFILAAANPAGGRYTSRFDLVYIMVDDPDETIDANISQQIMKLHQKHDDALDPAFSTAEVKCYVANAKTLKPKNIL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01872 96 ProSiteProfiles MCM family domain profile. 1 60 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre3g01872 96 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 93 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre3g01872 96 Gene3D - 1 94 IPR027417 -
Trre3g01872 96 Pfam MCM P-loop domain 1 35 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01872 Trre-Chr3 15378535 15379045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01872 1 93 Core DNA Replication Machinery Family AT5G44635 57.798 1.16e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01872 K02542 - csv:101219775 128.257