Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01860 ATGGAGTCATCGGTTGATTTGTTACCACCAGCTAAACGCACAGCTCCAACTGGAATTTCATCTGAGGAAGAATGCAAAAAACTTAAATTATCAAGTGATACCTTGCCGCATTCAGCACATGGAAATGTTGTAGATTACAAAAATCCAATCATGATGAAGAAAACCACAACCCAGAGAATAAAAAAGTTACTGGATGTTTCTGCCGATCAGCCACCCGAAGAAGAGGAAAAAGATGCTGACTGTGATCATTCTTTTGTTTTGAAAGACGACCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAACCGGGGAATGCCAAAGAAAAAGATGATAGGTTTGGAGTTAAGATTGCTCAAGATGATATCGTGGTAACTGAAATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAATTTTCTTGTCAGAAACCTGGCGGGGGACCATCCTGGGGGATGCATTCTGGCTCACGCCCCAGGATCTGGAAAGACATTCATGATTATCAGTTTTGTGCAGAGTTTTCTAGGAAAGTATCCCAATGCAAGACCTATGGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAGTTTCAAACTTGGCAAGTGGAAGATGTACCACTTTATGACTTATACACTGTGAAGGCTGACAGTAGATCACAACAATTGGAAGTCTTAAAGCAGTGGGTGGAAAACAAGAGCATCCTTTTTTTAGGATACCAACAGTTTTCTTCCATTATCTGTGATGACAGTAATAGCAATGCAACGCTATCTTGCCAAGATATATTGCTTAAGGTTCCCTCACTTCTCATTTTAGATGAGGGACACACTCCCAGGAACGAGAGTACTGATATTGTACAGTCCCTTGCAAAAGTACAAACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAGAATCATGTCAAGGAGGTATTTAATGTGCTTAACCTTGTTCGCCCAAAGTTTTTAAAGATGGAAACATCTAAGCATATTGCCCGGCGCATTCAGAGTAGGATCCATTTATCTGGTGTGAATAACTTCTATGAATTGGTTGAAAAGACTTTGCAAAAGGACCCAGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGAGAGATGACAAGTAAGGTACTGCACTACTATAAAGGAGATTTTCTTGACGAGCTTCCTGGCCTAGTAGATTTTACTGTGGTGCTCAAACTCACACCTAGACAGAAACATGATATTGAGGAAGTAAAGCGGAAAAAATATAGTAAGTTTAAGATGTCTTCTGTAGGTTGTGCAGTATATCTGCACCCAAAATTGACACCAATTGCAGAGAAATATGATGAAAAATTTAAATCTAAATATGATGATATAATGGATGATCTAATAGCGAACCACAATGTGAGGGATGGAGTTAAATCAAAATTCTTTTGCAATATGCTGAACCTATGCGAATCAGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATACCTCTTGCCTCTGAAATATTTAGAAAAGTTAGCAATGAAATGGAAGGGATGGAGTCTTGACAAAGAAATTTTTGTAATTTCGGGTGATTCAACCACTGAACAAAGGGAGTGCTCCATGGAAACATTTAACAATTCACCTGATGCCAAAATATTTTTTGGGTCCATCAAAGCATGTGGCGAGGGTATATCATTGGTTGGGGCATCCCGGATCATCATCTTAGATGTCCATTTGAACCCATCTGTTACGCGTCAAGCTATTGGCCGTGCTTTCCGCCCAGGTCAGAAAAAGAAAGTGTATGTTTATCGATTGATAGCTGCTGATTCCCTAGAAGAGCAAGATCACAGTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTATGGTGACAGAGCATTTGAAGTGGAAACACTCGACGTGAAGAAATGCGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAAAAGGTAA 2085 0.3947 MESSVDLLPPAKRTAPTGISSEEECKKLKLSSDTLPHSAHGNVVDYKNPIMMKKTTTQRIKKLLDVSADQPPEEEEKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSEPGNAKEKDDRFGVKIAQDDIVVTEISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPMVVLPKGILSTWKKEFQTWQVEDVPLYDLYTVKADSRSQQLEVLKQWVENKSILFLGYQQFSSIICDDSNSNATLSCQDILLKVPSLLILDEGHTPRNESTDIVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMETSKHIARRIQSRIHLSGVNNFYELVEKTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKHDIEEVKRKKYSKFKMSSVGCAVYLHPKLTPIAEKYDEKFKSKYDDIMDDLIANHNVRDGVKSKFFCNMLNLCESAGEKLLVFSQYLLPLKYLEKLAMKWKGWSLDKEIFVISGDSTTEQRECSMETFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVYVYRLIAADSLEEQDHSTCFKKELISKMWFEWNEYYGDRAFEVETLDVKKCGDLFLESPLLGEDVKALYKR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01860 694 Pfam SNF2-related domain 180 393 IPR000330 GO:0005524|GO:0140658
Trre3g01860 694 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 67 693 IPR044567 GO:0080188
Trre3g01860 694 SMART helicmild6 533 618 IPR001650 -
Trre3g01860 694 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g01860 694 Gene3D - 128 390 IPR038718 -
Trre3g01860 694 Pfam Helicase conserved C-terminal domain 504 617 IPR001650 -
Trre3g01860 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 381 IPR027417 -
Trre3g01860 694 Gene3D - 423 680 IPR027417 -
Trre3g01860 694 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 672 IPR001650 -
Trre3g01860 694 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 353 IPR014001 -
Trre3g01860 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 658 IPR027417 -
Trre3g01860 694 CDD SF2_C_SNF 501 629 - -
Trre3g01860 694 SMART ultradead3 156 363 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01860 Trre-Chr3 15308368 15313238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01860 515 637 RAD5 or RAD16-like Gene Family AT5G43530 36.585 8.75e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre3g01860 SNF2_N 1.2e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01860 K10875 - gmx:100780454 1051.97