Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01839 ATGGATCCTGTAAGGGATGTTGGTAGTGTTGTGGGGACAGTGTTGATTCCCACGCGGTTTGTGTGGCCATATGGTGGGAGAAGTGTTTTTCTCAGTGGTTCTTTCACAAGGTGGTCTGAGCTTTTGCCAATGACTCCGGTGGAAGGTTGCCCAACAGTATTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACATGATGAGAATCATCCTTATGTACATGGACAATATGGGATTGTCAACACTGTCTTATTGGCAACTGATCCTAACTACATACCTCTTATAACTTCAGACATTGCTTCCGGAAATAACATGGATGTGGATAATGAGACTTTTCGCCGCGTGCAGGTCCGGGTGGCAGACAATGCATTGAGTGAGGCGCTTCCAAGAATATCAGATACTGATGTACAGATCTCTCGTCAGCGTATTTCTGCATTTCTGTCTAAGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATGTACCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATATACATGGCTCCTCTCTGGGACATGAGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTGTCTTAATCTTAAGGGAGTTGGGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTGAACAGACAGAACAATGGACCTGGAACTTCATTTTCTAGACATCTTATCCATGCAGGACCATATGATAATCTTAAAGATATTGCCATGAAGATCTTACAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCCTTTCCACAGTTACTACATCTTGCTTCACTTTCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGAATTGCTTTAGTTCATTGCCTATACTACAACTTCCAATCTGTGCAATACCTGTGGGCACATGGGTGCCCAAAATCGGGGAATCAAATCGACGGCCTCTAGCAGTATTGAGACCGAGCTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCTCAAGCAAGTTCGATACCAATTGTTGATGATAATGACTCATTACTAGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCTTATACACATATCAATCTTGATGAAATGACTGTTCAACAGGCTTTGCAGTTAGGCCAGGACGCATACGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCACTGCATAAAGTGATTGAGCGTTTGGCAAATCCAGGTGTGAGGCGGATTGTTATCGTGGAAGCAGGCAGCAAGCGTTTAGAAGGCATTGTCTCATTGAGCGACATATTCAAGTTCTTTCTCAGTTAG 1452 0.4222 MDPVRDVGSVVGTVLIPTRFVWPYGGRSVFLSGSFTRWSELLPMTPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDENHPYVHGQYGIVNTVLLATDPNYIPLITSDIASGNNMDVDNETFRRVQVRVADNALSEALPRISDTDVQISRQRISAFLSKHTAYELLPESGKVVALDVDVPVKQAFHILHEQGIYMAPLWDMSKGQFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGPGTSFSRHLIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCFSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGQDAYELRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01839 483 Pfam CBS domain 352 399 IPR000644 -
Trre3g01839 483 Pfam CBS domain 435 481 IPR000644 -
Trre3g01839 483 SUPERFAMILY E set domains 16 97 IPR014756 -
Trre3g01839 483 SUPERFAMILY CBS-domain pair 350 482 IPR046342 -
Trre3g01839 483 SMART cbs_1 354 402 IPR000644 -
Trre3g01839 483 SMART cbs_1 172 221 IPR000644 -
Trre3g01839 483 SMART cbs_1 433 482 IPR000644 -
Trre3g01839 483 ProSiteProfiles CBS domain profile. 166 228 IPR000644 -
Trre3g01839 483 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Trre3g01839 483 Gene3D - 342 483 IPR046342 -
Trre3g01839 483 ProSiteProfiles CBS domain profile. 429 483 IPR000644 -
Trre3g01839 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 144 481 - -
Trre3g01839 483 Gene3D Immunoglobulins 16 107 IPR013783 -
Trre3g01839 483 ProSiteProfiles CBS domain profile. 350 407 IPR000644 -
Trre3g01839 483 SUPERFAMILY CBS-domain pair 153 324 IPR046342 -
Trre3g01839 483 CDD E_set_AMPKbeta_like_N 17 95 - -
Trre3g01839 483 Gene3D - 143 324 IPR046342 -
Trre3g01839 483 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01839 Trre-Chr3 14959404 14967179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01839 6 124 Protein tyrosine phosphatase (PTP) family AT3G01510 31.250 1.36e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01839 - - gmx:100785692 824.313