Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01825 ATGTTCAAATCATTTCTCTACCATAATGCTTTTGGCTTATCAACAACAACAACACTGCACCATTCACCCTTCCAATTTTCTCTCAAATTCCTCACCACTTCACCCTCACACCCATTCGCTGTATCTTACCTCATCGACAAATTCGGTTTCTCATCAGAATTCGCTTTCAAAGCTTCAAAACTCCTCCATTTCAAAACCTCAGAAAAACCCGATTCAGTTCTCAATTTCTTCACAACTCACGGTTTCACCGAGTCAGATATTCAAAACATCATCAAAAGAGAACCTTGGCTTCTTTCCTGTGATACCCAAAAAAGAATCCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAATTCTGACATTGTTCGTATGGTTGTAGTTAACCCTAGATTCATGAAATTGAGTTTGAATAATCTTGTTATCCCTCTTTATAAATTGGTATCTCGGTTCCTTAAATCGGATCAAAGGGCTATTGCTAAAATAATTTCAATTCCCTCTTTGATTTCTAATGATTATGTGATTCCTAATATTAATCTAATGGTTGATAAGGGTGTTTGCGATTCGAGTATTTATAGAATTCTTCGCGTTAAACCATATATTGTCTTTTGTAAGCCTAGGGTTTTAGAGGAGATGGTGGAGGAATTGAAAAACATGGGACTTGATCTTTCTAAAACATATTTTGGTGATGCATTGATTGCGAAGAGAGGTTTAAGTAAATCCAAATGGGATGAGAAAATCGATACTTATAAGAAATGGGGTTGGTCCTGGGAAACTATTTTGGAAGCTATTAGGACACAGCCAAAATGTATGTTAGTTTCGATTGATAAAATCAATAAGGTGATGCGGTTTTGGGTTTATGATTTAGGTTGGGATTCTTCTTATCTTGCTAAAGGACCGGGGATGTTTAGTTATTCTTTGGAGAAAAGAATCATTCCAAGAGCTATGGTTGTCTTTTGTCTTCAAACTAAGGGTTTGAGGAGCGACAGTACCAACTTGCTTTCTCCATTTTTTGTGTCTGAGAAATTGTTTTTGGAAAGGTTTGTGTTCTGTTTTAAAGAGGAGGAAATTGCTCATCTATTGAAGTTATATGGCACTATGATGAAGATAGGAGATAAGAAGTTTGATTTTTCTAACCCTAGTTTTGGGGTTCTCTCTCACAACCGCTGCTCTCTCTCAGTTTCTTCTACAAGTTTGAAGCTTTTTTTTTATACTCTCAAAGATCTACTAGGTACCACTGTCTCACTTCCTCTAGTTTTCATCTTCTCATGCTTCATGGGAAAAATCGACAAATCGGTAGAGTGA 1308 0.3654 MFKSFLYHNAFGLSTTTTLHHSPFQFSLKFLTTSPSHPFAVSYLIDKFGFSSEFAFKASKLLHFKTSEKPDSVLNFFTTHGFTESDIQNIIKREPWLLSCDTQKRILPKFQFLLSKGASNSDIVRMVVVNPRFMKLSLNNLVIPLYKLVSRFLKSDQRAIAKIISIPSLISNDYVIPNINLMVDKGVCDSSIYRILRVKPYIVFCKPRVLEEMVEELKNMGLDLSKTYFGDALIAKRGLSKSKWDEKIDTYKKWGWSWETILEAIRTQPKCMLVSIDKINKVMRFWVYDLGWDSSYLAKGPGMFSYSLEKRIIPRAMVVFCLQTKGLRSDSTNLLSPFFVSEKLFLERFVFCFKEEEIAHLLKLYGTMMKIGDKKFDFSNPSFGVLSHNRCSLSVSSTSLKLFFYTLKDLLGTTVSLPLVFIFSCFMGKIDKSVE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01825 435 SMART mt_12 193 223 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 Gene3D Transcription termination factor 3, mitochondrial 155 361 IPR038538 -
Trre3g01825 435 FunFam Mitochondrial transcription termination factor-like 138 357 - -
Trre3g01825 435 Pfam mTERF 239 334 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 Pfam mTERF 74 223 IPR003690 GO:0003690|GO:0006355
Trre3g01825 435 PANTHER CGI-12 PROTEIN-RELATED 36 356 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01825 Trre-Chr3 14771614 14778382 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01825 mTERF 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01825 K15032 - mtr:25488156 333.954