Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01821 ATGTTCAAACAATTTCTCTACGACAATGCATTTCGCTTATCAACAACAACACTGCACCATTCACGTTTCCAATTTCCTCTCAAATTCCTCACAACTTCACCGTCACCCTCACCATCACACTCACACCCATTCGCTGTATCTTATCTCATCGACAAATTCGGTTTCTCACCAGAATTCGCTTCCAAAGCTTCAAAACTCGCTCATTTCAAAACCTCAAAACAACCCGAATCAGTTCTCAATTTCTTCACAACTCACGGTTTCACCGATTCAGATATTCACAACATCATCAAAAGAGAACCATGGCTTCTTTCTTGTGATACCCAAAAAAGAGTCCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTAATTCCGACATTGTTCGTATAGTTGTAGGTAACCCTAGATTCATGAAATTGAGTTTGAATAATCGTGTTATCCCTCTTTATAGATTGGTATCTCGGTTCCTTAAATCGGATCAAAAAGCTATTGCTTCTATAATTTCAATTCCCTCTTTGCTTTCTAGTGATTATATGATTCCTAATGTTAATTTAATGATTGATAAGGGTGTTTGCGATTCGAGTATTTTTAGAATTCTTCGTACTAGACCGAATATTATCTTTTGTAGGCCTAGGGTTTTAGGGGAGATGGTGGATGAATTGAAAAACTTGGGGTTTGTTCCTTCTAAAGCATATTTTGGTGATGCCTTGCTTGCTAAGATAGGTTTAAGTAAATCCAAATGGGATGAGAAAATTGATGCTTTTAAGAAATGGGGTTGGTCCGAGGAAACTATTTCGGAAGCTATTAGGAAGCAGCCGAAATGTATGTTAGTTTCAATCGATAAAATCAATAGGGTGATGCGGTTTTGGGTTAATGATTTAGGATGGGATTCTTCTTATCTTGCTAAGGGACCAGGGATCTTTCTTTATTGTTTGGAGAAAAGGATCATTCCAAGAGCTATGGTTGTCTTTTCTCTTCAAACTAAGGGTTTGAGAAGCGAGAGTGCCAGCTTGCTTTCTCCATTTTACGTGTCTGAGAAATTGTTTTTGGATAGGTATGTGTTCCGTTTTAAAGAGGAGGAAACTGCTCATCTATTGAATTTATATCGCACTATGATGAAAGTGGGAGATGAGAAGATAAGTAGCATAGGCGATTCATGTCAAAAATCACGTTTGTAA 1182 0.3773 MFKQFLYDNAFRLSTTTLHHSRFQFPLKFLTTSPSPSPSHSHPFAVSYLIDKFGFSPEFASKASKLAHFKTSKQPESVLNFFTTHGFTDSDIHNIIKREPWLLSCDTQKRVLPKFQFLLSKGASNSDIVRIVVGNPRFMKLSLNNRVIPLYRLVSRFLKSDQKAIASIISIPSLLSSDYMIPNVNLMIDKGVCDSSIFRILRTRPNIIFCRPRVLGEMVDELKNLGFVPSKAYFGDALLAKIGLSKSKWDEKIDAFKKWGWSEETISEAIRKQPKCMLVSIDKINRVMRFWVNDLGWDSSYLAKGPGIFLYCLEKRIIPRAMVVFSLQTKGLRSESASLLSPFYVSEKLFLDRYVFRFKEEETAHLLNLYRTMMKVGDEKISSIGDSCQKSRL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01821 393 Gene3D Transcription termination factor 3, mitochondrial 161 363 IPR038538 -
Trre3g01821 393 Pfam mTERF 79 227 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 Pfam mTERF 242 350 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 SMART mt_12 198 228 IPR003690 GO:0003690|GO:0006355
Trre3g01821 393 FunFam Mitochondrial transcription termination factor-like 143 362 - -
Trre3g01821 393 PANTHER CGI-12 PROTEIN-RELATED 41 359 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01821 Trre-Chr3 14737536 14738717 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01821 mTERF 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01821 K15032 - mtr:25488156 339.347