Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01818 ATGGAGCTTGGATCGGTGGTCGAAGCAGTTTCTGCGGATGCTGGTGGCGGCGACGGTGCTCCTCTCTACAACATTGAAAGCTTCCAAAGCCTATGCATGCATTGCGGTGAAAATGGAACTACAAATTCCTTCATCACTCTCATTCCTCACTTCAAAAAGATTTGGTTGTCTGCTTTTGATTGTCCTCACTGTGGTGACAAGAACAATGAAGTGATGTTTGTTGGCGATATTCCACCGCACTGTTGCTGTTACACCCTGAAGATCCCATCCGGAAATTCAGAGATGCTCAATAGGCAAGTTGTCAAATCGGAATATGCTACCATTAAGATACCAGAATTGGATTTTGAGATTCAATCAGAGGCTCGTTGCGGTAGTCTATCAACGGTAGAAGGGATACTGATGCGAGCTGCTGATGACCTTCAAGCTCTTCAGGAGGAACGCAAAAAAGTGACTCCGGAGACAGCTGAAGCAATTGATCAGTTCTTGGTAAAATTTCGAGCTTGTGCAACAGGAGAATCATCATTTACATTTGTTATTGACGATCCTGCTGGAAATAGCTTCATTGAAAACCCGTTTGCACCATCATCTGATCCATCACTAACAATCAAGTTTTATGATCGAACTCCTGAGATACAAGCATCGTTGGGATATCAAGTGAGGGAAGAGCCACACGGGTCAGTAGGGGCAGCAGCAGGTCATAGAGCCATTGCACAGAGTAACAGCGCAGAAATTGCAGAAGCCTTATTTCGATATACTGCACCAGAAGAGGTGTATGCTTTCCCGGTAACTTGTGGTTGTGGTAGTGGATGTGAAACTCGAATGTTTCCTATTGATATTCCGTACTTCCAAGAAGCAATTGTTATGGCATCCACTTGTGATGCTTGTGGTTACCGCAGCTCTGAGTTGAAAGCCGGTGGAGAAGTTTCTAAAAAAGGAAAAAGCATAACTCTTTCTGTGCAAAACATTAACGACCTAAGCCGTGATGTAATAAAGTCTGATACTGCAAGTATAAAAATTCCTGAACTTGACTTCGAGCTGGCAAGTGGCAGTCGCACTATCGGAGGAGTTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGATCCATGGTTTTACTTTCGGAGATAGTCTTGAGGAACATAGTAGAAGCAAATGGCTAGACTTTGAGGACAGGCTAAACAAGATTCTTAGCTTGGAAACACCTTGGACTTTAATTCTTGATGATGCATTAGCATGCTCTTTTATAGCACCTGCAACTGATAATCTCGAAGACGACAAACAGTTAATGTATGAGGAATATGAGAGGACATGGGAGCAAGAGGAAGAATTAGGTCTGCATCAGATGGACACCACTTCTGCCGATGCTGCTTATGAATCATAA 1398 0.4306 MELGSVVEAVSADAGGGDGAPLYNIESFQSLCMHCGENGTTNSFITLIPHFKKIWLSAFDCPHCGDKNNEVMFVGDIPPHCCCYTLKIPSGNSEMLNRQVVKSEYATIKIPELDFEIQSEARCGSLSTVEGILMRAADDLQALQEERKKVTPETAEAIDQFLVKFRACATGESSFTFVIDDPAGNSFIENPFAPSSDPSLTIKFYDRTPEIQASLGYQVREEPHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVYAFPVTCGCGSGCETRMFPIDIPYFQEAIVMASTCDACGYRSSELKAGGEVSKKGKSITLSVQNINDLSRDVIKSDTASIKIPELDFELASGSRTIGGVVTTVEGLITKISESLERIHGFTFGDSLEEHSRSKWLDFEDRLNKILSLETPWTLILDDALACSFIAPATDNLEDDKQLMYEEYERTWEQEEELGLHQMDTTSADAAYES 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01818 465 FunFam Zinc finger protein ZPR1 253 306 - -
Trre3g01818 465 PANTHER ZINC FINGER PROTEIN ZPR1 16 464 IPR040141 -
Trre3g01818 465 SMART zpr1 30 190 IPR004457 GO:0008270
Trre3g01818 465 SMART zpr1 262 423 IPR004457 GO:0008270
Trre3g01818 465 Gene3D ZPR1, zinc finger domain 256 305 IPR042452 -
Trre3g01818 465 Pfam ZPR1 zinc-finger domain 30 189 IPR004457 GO:0008270
Trre3g01818 465 Pfam ZPR1 zinc-finger domain 265 421 IPR004457 GO:0008270
Trre3g01818 465 Gene3D ZPR1, zinc finger domain 23 75 IPR042452 -
Trre3g01818 465 FunFam Zinc finger protein ZPR1 307 451 - -
Trre3g01818 465 Coils Coil 126 146 - -
Trre3g01818 465 FunFam zinc finger protein ZPR1 76 217 - -
Trre3g01818 465 NCBIfam ZPR1 zinc finger domain 265 454 IPR004457 GO:0008270
Trre3g01818 465 NCBIfam ZPR1 zinc finger domain 32 217 IPR004457 GO:0008270
Trre3g01818 465 Gene3D ZPR1, A/B domain 307 451 IPR042451 -
Trre3g01818 465 Gene3D ZPR1, A/B domain 76 217 IPR042451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01818 Trre-Chr3 14721600 14728094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01818 1 465 C2H2 Transcription Factor Family AT5G22480 65.979 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01818 K06874 - gmx:100814878 682.559