Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01817 ATGTCGAAATGTTTTCTAGGGTTTATTACAAGAAAATCAACAATCCCTAAATTGGATCCTCTTTCTCAACACTTTTCGTTCCCAATTTCACACAGATCGTTCAGATACTGCACAACCACATCACAATCAGAAACACAACCATTTCCAGTATCATACCTCATCAACAATTTCGGTGTCTCACATGAATCAGCTCTCAAAGCATTCAACAACAAACAGGTTCGTTTCAAATCACCAGAAAAACCTAATTCGGTTATCAACTTCTTCAAAGACAATGGTTTTACACACTCCGACATACACACCATCATCAGAAAAACACCATGCTTACTTTCATCACAACCCAACAATGCAATTTTGCCAAAGTTTCAATTTTTTCTATCCAAAGGTGCTTCTTCCTCTGATATTGCTTCATTGTTAACTGCAAACCCTACAATTTTACAACGTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAGTAGGTTTTTGAAAACCAACAAGGATGTTATTGTTTGCTTAATTCGAAATTGGACTGCATATCTTGTGAATTCCTATCCACGTATGCTGGTTAATATCAATTTGATGACTGATTTTGGAGTTTCCAATTCTAACATTGCTAGATTGCTTCAATTTAGGCCATCTATATTTGGTTCAACTGATTTGATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTGATCCTTCAATGACTACTTTTGTGTATGCTTTGTCGGCCAAGAAATGTATAAGTAAAGAACTTTGGAATCAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTGATGAAGCTGTTTTTCAAGCATTTAGGTCATATCCTAGTTTGATGTTGTTTTCAACTGATAAGGTCAATTTGGTGATGAGTTTTTGGGTCAATCAAATGGGTTGGAATTCCTTGTCACTTACTAAATATCCAAATATGTTTGGTTATAGTTTACATAAAAGGGTCATTCCAAGAGCTTCAGTTTTGCAATTTCTTTTGATGAAAGGTCTGCGAAAAAAGAATGCAAGCTTAGTTACACCATTTACTTGTTCTGAGAAGTTGTTCTTGAGCAAGAGGAGAACAATGGCAAGCGGTTCAGTAAATAGTTTATCTTTGTTACTGCTGCATGACATTGCGTCCACATTCCTACTCATCGACACGGACTGCCTGTTGAATGAACCTCTCGATGTTTATTCCTTGCTTGTAACCAAAGCATCACAGAGGAACAAAAGAAAACCTGAGAAAGCAATCTGA 1260 0.3627 MSKCFLGFITRKSTIPKLDPLSQHFSFPISHRSFRYCTTTSQSETQPFPVSYLINNFGVSHESALKAFNNKQVRFKSPEKPNSVINFFKDNGFTHSDIHTIIRKTPCLLSSQPNNAILPKFQFFLSKGASSSDIASLLTANPTILQRSLEKRIIPLFELLSRFLKTNKDVIVCLIRNWTAYLVNSYPRMLVNINLMTDFGVSNSNIARLLQFRPSIFGSTDLIKSLEEVKGLGFDPSMTTFVYALSAKKCISKELWNQKVDVFKKWGWSDEAVFQAFRSYPSLMLFSTDKVNLVMSFWVNQMGWNSLSLTKYPNMFGYSLHKRVIPRASVLQFLLMKGLRKKNASLVTPFTCSEKLFLSKRRTMASGSVNSLSLLLLHDIASTFLLIDTDCLLNEPLDVYSLLVTKASQRNKRKPEKAI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01817 419 PANTHER CGI-12 PROTEIN-RELATED 50 360 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 Gene3D Transcription termination factor 3, mitochondrial 167 364 IPR038538 -
Trre3g01817 419 FunFam Mitochondrial transcription termination factor-like 149 361 - -
Trre3g01817 419 Pfam mTERF 252 357 IPR003690 GO:0003690|GO:0006355
Trre3g01817 419 Pfam mTERF 85 291 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01817 Trre-Chr3 14716882 14720240 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01817 mTERF 5.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01817 K15032 - mtr:25488156 325.865