Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01816 ATGTTGAAAGCTTTTCTATGCTACAATGCTTTTTGCATACCAACAACACTCTACCACTACTCACCCTCTCAATTTTCTGTAAAATGCATCACCACTTCATCCTCAAACTCAAACTCAAACTCATTCTCATCAGAATCTGCAATCAAAGCTTCCAATCAAGTTGATTCCAAGAACCCTAAAAACCCAGAATCAGTTTTCACCTTCTTAAAAACCCACGGTTTTATGGACTCAGAGATACAAGCCATCATCGAAAGAGAACCAGAGTTTCTTTCCTGCGACCCCAGCAAAACGTTATTGCCAAAGTTTCAATTTTTACGCTCCAAAGGTGCTTCTACCTCTGACATTGTTCGTATAACTGTTTATGATCATGGGTTTAGGAAATTAAGCTTGAAGGAAGTTGAAATTAAATTTGAATTTTTTTTATCAAAAGGTGTTTCTTCCTCTGATATTGTTTCATTGTTAACTGCAAACCCTAAAATTTTACAAGCTAGCTTGGAGAAACAAATAATCCCTCTTTTTAAATTGTTAAGTGGATACTTGAAAATCAGGGATATACTCGTTTGCTTAATTCGAAAATGGTTTGCATTTGATCGTATTTCATATGACCTTATTGTGGAAAATATCAATTTGATGACTGATTTTGGAGTTTCTAAGTATAACATTGCTACATTGTTTCGAAGAAGGCCGTCTATATTTGGTTCAAATGATTTGATTAAGTCGTTGGAGGATGTTAAGGGTTTAGGGTTTAAACCTTCAAGGACTACTTTTGGGGCTGCTTTGGTAGCCAGGAAATGTATAAGTAAACAAATGTGGAATCAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGAAGAAGTTGTTTTACAAGAATTTAGGTCATGTCCTAGTTTGATGTTGGTTTCAATTGATAAGATTAATTTGGTGATGAATTTTTGGGTCAATCAATTGGGTTGGGATTCCTTGTTACTTACTAAATATCCACTTATGTTTACTCATAGTTTATCTCAAAGGATCATTCCAAGGGCCTTTGTTTTGCAATATCTTTTGAATAAAGGTTTGTGGAAAACAAGCTTAGTTAACCCATTTAATTATACTGAGAAGGTGTTCTTGGAGAAGTGTGTTTTCAAATTTAAGGAGGAATCTGATTATCTACTAAAGCTATATGAGGACAAAATGAATCTCGCATACACAAAGAAGAAAACAAAGGCATCCAACTGA 1221 0.3464 MLKAFLCYNAFCIPTTLYHYSPSQFSVKCITTSSSNSNSNSFSSESAIKASNQVDSKNPKNPESVFTFLKTHGFMDSEIQAIIEREPEFLSCDPSKTLLPKFQFLRSKGASTSDIVRITVYDHGFRKLSLKEVEIKFEFFLSKGVSSSDIVSLLTANPKILQASLEKQIIPLFKLLSGYLKIRDILVCLIRKWFAFDRISYDLIVENINLMTDFGVSKYNIATLFRRRPSIFGSNDLIKSLEDVKGLGFKPSRTTFGAALVARKCISKQMWNQKVDVFKKWGWSEEVVLQEFRSCPSLMLVSIDKINLVMNFWVNQLGWDSLLLTKYPLMFTHSLSQRIIPRAFVLQYLLNKGLWKTSLVNPFNYTEKVFLEKCVFKFKEESDYLLKLYEDKMNLAYTKKKTKASN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01816 406 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 SMART mt_12 151 183 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 SMART mt_12 80 111 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 SMART mt_12 222 250 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 Pfam mTERF 131 232 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 Pfam mTERF 67 118 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 Pfam mTERF 201 370 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 PANTHER CGI-12 PROTEIN-RELATED 38 119 IPR003690 GO:0003690|GO:0006355
Trre3g01816 406 FunFam Mitochondrial transcription termination factor-like 165 382 - -
Trre3g01816 406 Gene3D Transcription termination factor 3, mitochondrial 38 140 IPR038538 -
Trre3g01816 406 Gene3D Transcription termination factor 3, mitochondrial 184 387 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01816 Trre-Chr3 14711919 14713139 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01816 mTERF 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01816 K15032 - mtr:25488156 280.796