Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01804 ATGCTTCGTTACATAATCTTCAATTCCAACCATTACAGAACCCTAAACCCCCAAAAATCTTACCCTTTTTTCCCATTCCAATTTTCTCACAAATTCAAATTCTGCACCACATCTTCAGATTCCGAATCTGAATCTGAATCTGAATCAGACTCATTCGCTATTTCCTACCTCATCAACAACATCGGTTTCACTCGTGAAACAGCTCTTAAAGCTTTAAAACGAGTTCGTTTCAAATCCCCACAAAAAGCCAATTCAGTTTTCACTTTCTTCAGAAACTTCGGTTTTTCAGATACCAACATAAAGAAAATCATCATAAAAGAACCATGGCTTCTTACTTCAGATACCCACAATTCAATTCTTCCAATGATTCAATTTTTCCTCTCCAAAGGTGCTTCAATCTCTGAAATTTCTCGCCTTTTAACCGTCAGCCCTAGAATTTTACAATTTAGTTTGGAGAATCGAATTATCCCTCTTTTTGAATTTTATAATAAGATTTTGAAATCTGATAAAGCTACAATTTGTTGCATGATTCGAAATTCGATTCTTTTGTCTTACAATCTTGCTCCTGTTAATGTTAAGTTGTTAATTGATTATGGAGTTTGTGATTCTAGTATTGCTAAATTGCTTTTGACAAGACCAACTATACTTGGTTCAAGTGATTTGATTAATTCTTTGGAGGAAGTTAAAGGTTTAGGGTTTAATCCTTCAAATTCCACTTTTGGGATAGCTTTGGTTGCAAGGAAATGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTGTGGAATCCTTTAGGTTGTATCCTAGTTTGATGTTGTCTTCAGTTGATAAGATTAATTTGGTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCTTTGGCACTTACTAGAAAGCCGCAAATTATCGGCTATAGTTTGCAGAAAAGGATCATTCCGAGGGCATTTGTTGTGCAATATCTTCTGATGAAAGGTTTGAGGAAAAAGTGTGCAAGCTTAGTTACACCGTTTTTTTGGTCCGAGGAACTGTTCTTGAGCAAATATGTTTTCTGTTTTAAGGAAGAGTCTGATTATTTATTAAAGCTTTATGAGGAAAACATGAATCATACATACACCAAGGAGAACATTGACATGCCATTCATCAAATAG 1185 0.3494 MLRYIIFNSNHYRTLNPQKSYPFFPFQFSHKFKFCTTSSDSESESESESDSFAISYLINNIGFTRETALKALKRVRFKSPQKANSVFTFFRNFGFSDTNIKKIIIKEPWLLTSDTHNSILPMIQFFLSKGASISEISRLLTVSPRILQFSLENRIIPLFEFYNKILKSDKATICCMIRNSILLSYNLAPVNVKLLIDYGVCDSSIAKLLLTRPTILGSSDLINSLEEVKGLGFNPSNSTFGIALVARKCMSKKLWDEKVDAFKKWGWSDEDVVESFRLYPSLMLSSVDKINLVMSFWVNQLGWNSLALTRKPQIIGYSLQKRIIPRAFVVQYLLMKGLRKKCASLVTPFFWSEELFLSKYVFCFKEESDYLLKLYEENMNHTYTKENIDMPFIK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01804 394 Gene3D Transcription termination factor 3, mitochondrial 181 373 IPR038538 -
Trre3g01804 394 FunFam Mitochondrial transcription termination factor-like 151 368 - -
Trre3g01804 394 Pfam mTERF 89 217 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 Pfam mTERF 191 356 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 PANTHER CGI-12 PROTEIN-RELATED 48 366 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 SMART mt_12 206 234 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Trre3g01804 394 SMART mt_12 137 168 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01804 Trre-Chr3 14608957 14610141 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01804 mTERF 8.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01804 K15032 - mtr:25488156 360.533