Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01799 ATGGGTTTCCGTTTGAATGTTATTCGACGGGCCAACCAAACAGCATCAAAATCTGCAGAAGTTCCAAAGGGCTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTGATCCCAATATCATATTTGAACCAACAATCATTTCAAGACTTATTGAGTCAAGCTGAGGAAGAGTTTGGATACGATCATCCCATGGGTGGCCTCACCATTCCTTGCACTGAAGATGTTTTTCAACACATAACTTCTCGCTTGAATGAGCTATGA 267 0.4195 MGFRLNVIRRANQTASKSAEVPKGYVAVYVGEKQKRFVIPISYLNQQSFQDLLSQAEEEFGYDHPMGGLTIPCTEDVFQHITSRLNEL 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01799 88 Pfam Auxin responsive protein 13 85 IPR003676 GO:0009733
Trre3g01799 88 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 13 85 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01799 Trre-Chr3 14588067 14588333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01799 13 81 Calmodulin-binding Proteins AT3G43120 47.826 1.80e-19 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01799 K14488 - gmx:100816803 154.066