Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01796 ATGGTACCCCAACCCTTTTCATCTTCTTCATATTCACCATTTTCTCCATTTTTTCCATTTCAAATAAAATCAAAAGCTTTTCAAATCTTCTCTGCACCACCACCTTATCTCTATCTCAAAAATCACTTAACTTTCCCTCTTATCATCCATCATCACTTTCCATCACCATCTTCTCTGCATTCTTCCACCAACACCTCTGATGATTCAAACTCTTTTGCAGTCTCTTACCTCATCAACACTTTTAACTTCTCCCCAAAATTTGCTTCCAAACTCTGCAACACTTACGATATTCGTTTCAAGACTGCAGAAAACCCTGATTCTGTTCTCAGCTTCTTCAAAAACAATGGTTTCTCAGATACCCAATTACGCTATATGATTCCCAAGGCACCATGGCTTCTTTCATGCAACCTCTCCTTAAGGGTCATGCCAAAGTTTGAATTTTTTCTCTCCAAAGGTGCTTCTAAAGCTGACATTTTAAAACTTATCAGTAAGTACCCTATGGTTCTGTCTCCAAGCTTGGAGAATCATACAGTTCCAACCTATGAATTGTTATATAGATTCATGAAATCAGATAAGAAAACTATTGCTCTTGTAATTCATAAACCATATTTACTAAGTTCTCATCTTGTGTCACATAACATTAAAATGTTGGTTGATATTGGAGTTAAGGACTCAACCATTATAAGATTGCTTGAGCTTCGGAACTGTACTCGGTTATTCCAGTCAAATCACATGTCGAAGCTGGTGGAGGAAGTAAAGAATTCAGGGTTTAATCCTTTGAGAACAACTTTTGTTATAGCATTGATTGCAAGAGAAAATAAACTATCATGGAAAGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTAAAAGAAGCATTTGAAAAGCAGCCTCATTGTATGTTAACTTCCGTTGATAAAATTAATTCAGTGATGAATTTTTGGGTCAATCAAATGGGTTGGGATGCTCGCGCCATTGCCAAAGCACCACATATTTTGTCGTTAAGTTTAGAAAAAAGGATCACTACAAGGGCACCCGTTGTGCAATTTTTGCTGGAGAGTGGTCTGCAAAAAGAGAATGCAAGCTTAACCTATCCATTTGTAGTGTCTGAGAAGTTGTTTCGTGATGCCTATTTAAAACGCTATAAGGAGGAGTCTTATCTATTAAAGTTGTATGAGGAAAAACTCGATCTTGCATCCACGGACAAAAATGGCATGCGATGA 1236 0.3714 MVPQPFSSSSYSPFSPFFPFQIKSKAFQIFSAPPPYLYLKNHLTFPLIIHHHFPSPSSLHSSTNTSDDSNSFAVSYLINTFNFSPKFASKLCNTYDIRFKTAENPDSVLSFFKNNGFSDTQLRYMIPKAPWLLSCNLSLRVMPKFEFFLSKGASKADILKLISKYPMVLSPSLENHTVPTYELLYRFMKSDKKTIALVIHKPYLLSSHLVSHNIKMLVDIGVKDSTIIRLLELRNCTRLFQSNHMSKLVEEVKNSGFNPLRTTFVIALIARENKLSWKEKVDTFKKWGWSDEDVKEAFEKQPHCMLTSVDKINSVMNFWVNQMGWDARAIAKAPHILSLSLEKRITTRAPVVQFLLESGLQKENASLTYPFVVSEKLFRDAYLKRYKEESYLLKLYEEKLDLASTDKNGMR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01796 411 SMART mt_12 327 361 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 SMART mt_12 195 223 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 Pfam mTERF 109 270 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 Pfam mTERF 277 378 IPR003690 GO:0003690|GO:0006355
Trre3g01796 411 FunFam Mitochondrial transcription termination factor-like 173 390 - -
Trre3g01796 411 Gene3D Transcription termination factor 3, mitochondrial 172 392 IPR038538 -
Trre3g01796 411 PANTHER CGI-12 PROTEIN-RELATED 69 389 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01796 Trre-Chr3 14573070 14574305 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01796 mTERF 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01796 K15032 - mtr:25488156 421.009