Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01793 ATGGTACACCAACCCTTTTCATCTTCTTCATATTCATCATTTTCTCCATTTTTTCCACTTCAAATCAAATCTAAATCTCTTCAATTGTTCAATACACCACCACCTTATCTTTATCTCAAAAACAACTTAACTTTACCTCTTATCATCCATCACTTTCCATCACCATGTTCTCTGCATTCTTCCACCAACACTTCTGATGATTCAACCTCTTTTGCAGTCTCTTACCTCATCAAAACTTTTGACTTCTCCCCAAAATTTGCTTCCAAACTCTGCAACACTTACGATATTCGTTTCAAAACTGCTGAAAACCCTGATTCTGTTCTCAACTTCTTCAAAAACAATGGTTTCTCAGATACCCAATTACGTTATATGATTCCCAAAGCACCATGGCTTCTTTCCTGTAATCTCTCATTAAGGGTCATCCCAAAGTTTGAATTTTTACTCTCCAAAGGTGCTTCTAAAGCTGACATTTTTAAACTTATCAGTAAGTCCCCTATGGTTCTGTCTCCAAGCTTGGAGAATCATACAGTTCCAACCTATGAATTGTTATATAGATTCATGAAATCAGATAAGAAAACTATTGCTCTTTTAATTCACAAACCATATTTACTTAGTTCTCATATTGTGTCACATAACATCAAAATGTTGGTTGATATTGGAGTTACGGACTCGGCCATTATAAGATTGCTTAAGCTTCGGAATCGGTTAATCCAGACAAATCACATGTCGAAGTTGGTGGAGGAAGTAAAGAATTCAGGGTTTAATCCTTCAACAACAACTTTTGTTATAGCATTGATTGCAAGAGAAAACAAACTATCATGGAAAGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATAGAAGCATTTAAAAAGCAGCCTCATTGTATGTTAACATCCATTGATAAAATTAATTCAGTGATGAATTTTTGGGTCAATCAAATGGGTTGGGATGCTCGCGCCATTGCCAAAGCACCACATATTTTGTCATTAAGTTTGGAAAAAAGGATCACTACAAGGGCACCCGTTGTGCAATTTTTGCTCGAGAGTGGTCTGCAAAAAGAGAATGCAAGCTTAACTTATCCATTTGTAGTGTCTGAGAAGTTGTTTCGTGATGCGTATTTAAAACGTTATAAGGAGGAGTCTTATCTATTAAAGTTGTATGAGGAAACACTCGATCTTGCATGCACGGACAAAAATGGCATGCGATGA 1227 0.3627 MVHQPFSSSSYSSFSPFFPLQIKSKSLQLFNTPPPYLYLKNNLTLPLIIHHFPSPCSLHSSTNTSDDSTSFAVSYLIKTFDFSPKFASKLCNTYDIRFKTAENPDSVLNFFKNNGFSDTQLRYMIPKAPWLLSCNLSLRVIPKFEFLLSKGASKADIFKLISKSPMVLSPSLENHTVPTYELLYRFMKSDKKTIALLIHKPYLLSSHIVSHNIKMLVDIGVTDSAIIRLLKLRNRLIQTNHMSKLVEEVKNSGFNPSTTTFVIALIARENKLSWKEKVDTFKKWGWSDEDVIEAFKKQPHCMLTSIDKINSVMNFWVNQMGWDARAIAKAPHILSLSLEKRITTRAPVVQFLLESGLQKENASLTYPFVVSEKLFRDAYLKRYKEESYLLKLYEETLDLACTDKNGMR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01793 408 SMART mt_12 292 323 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 SMART mt_12 324 358 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 SMART mt_12 194 222 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 FunFam Mitochondrial transcription termination factor-like 172 387 - -
Trre3g01793 408 Pfam mTERF 274 375 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 Pfam mTERF 108 255 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 PANTHER CGI-12 PROTEIN-RELATED 68 386 IPR003690 GO:0003690|GO:0006355
Trre3g01793 408 Gene3D Transcription termination factor 3, mitochondrial 189 389 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01793 Trre-Chr3 14557005 14558231 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01793 mTERF 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01793 K15032 - mtr:25488156 431.409