Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01790 ATGTTGAAGTTCAATTCATGGCGCAACAAAACCCTAATCTATTATCACAAGGGATTAACTTCCCCACAAACAATAAAATCTCAAAACCCTAATCCTCTTTTCCACCATTACCCATCACTGTTTTCTCTGCATTTCTGCACCAACACTTCCGATTATTCAACCCCATTTCCTGTCTCATACCTCATCAACAAATTTGGCTTCTCCCAACAATCTGCTTCCAAACTCTGTTCCACCTACCGTCTTAGATTTAAGACTGCCAAAAAACCTGACTCTGTTCTTGCATTCTTTAGAAACCATGGTTTCTCAGAAACCCAATTTCGTGATATCATTGCAAAATCACCAGACCTACTTTCCTGCAACCCCTCCAAAAGGGTATTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTCAGTAAGAACCCTAGAGTCTTGTCTCCAAGCTTGAAGAATCATATAGTCCCAACCTATGAATTGGTTTATGGAATCTTGAAATCTCATGAGGAGACTATTGCTAGTGTGATTCTTAAATCAGTTCTCCATGGAGAAAAGCATGTGCCTTCTAATATCAGATTGCTTATCGAGAATGGAGTGTCCGACTCAAACATTGCAAAATTGCTTCGAAACTGGGGTCTAACATTACGGACACATGACATGCTGAAGTTGGTGGAGGAATTAAAGGATTTGGGGTTTCATCCTTCGCATACAACTTTCGCAATAGCATTGCATGCGAAAACATTTGTAATAAAAAACCTATGGAAAAAGAAAGTAGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTGTGAATGCATTTAGAAAGCAGCCTTATTGTATGTTAGTATCCATTGATAAAATTAATTTGTTGATGAGTTTTTGGGTTGATCTGTTGGGTTGGGATCCACTTGTCCTTGCCAAAGGACCGTCGCTTTTTTTGTTAAGTTTGGAAAAAAGGATCATTCCTAGGGCTGAAATAGTGCAATTTCTGCTGAAGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAACTTGTCCATTTGTAGTGCCTGAGAAGTTGTTTCTTGATACGTTTATAATGCGTTTTAAGGAGGAGTCTTCTTATCTATTTAAGTTGTACCAGGAAAAACTCAATCTTCCATGTACTAGGACTAGGGATAAAACTTGCGTGTCATGGGGCAAGGTGTTTTAG 1215 0.386 MLKFNSWRNKTLIYYHKGLTSPQTIKSQNPNPLFHHYPSLFSLHFCTNTSDYSTPFPVSYLINKFGFSQQSASKLCSTYRLRFKTAKKPDSVLAFFRNHGFSETQFRDIIAKSPDLLSCNPSKRVLPKFQFFLSKGASNSDIVNLVSKNPRVLSPSLKNHIVPTYELVYGILKSHEETIASVILKSVLHGEKHVPSNIRLLIENGVSDSNIAKLLRNWGLTLRTHDMLKLVEELKDLGFHPSHTTFAIALHAKTFVIKNLWKKKVDTFKKWGWSDEDVVNAFRKQPYCMLVSIDKINLLMSFWVDLLGWDPLVLAKGPSLFLLSLEKRIIPRAEIVQFLLKKGLRKKNASLTCPFVVPEKLFLDTFIMRFKEESSYLFKLYQEKLNLPCTRTRDKTCVSWGKVF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01790 404 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 SMART mt_12 311 345 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 SMART mt_12 279 310 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 Pfam mTERF 93 220 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 Pfam mTERF 193 357 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 PANTHER CGI-12 PROTEIN-RELATED 58 371 IPR003690 GO:0003690|GO:0006355
Trre3g01790 404 FunFam Mitochondrial transcription termination factor-like 157 374 - -
Trre3g01790 404 Gene3D Transcription termination factor 3, mitochondrial 187 377 IPR038538 -
Trre3g01790 404 Gene3D Transcription termination factor 3, mitochondrial 58 186 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01790 Trre-Chr3 14538776 14539990 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01790 mTERF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01790 K15032 - mtr:25488156 484.952