Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01786 ATGTTGAAGTTCAATTCATGGCGCCACAAAACCCTAATCTATTATCTCAAAGGATTAACTTCCCCACAAACATTACAATTTCAAAACCCTAACCCTATTTTCCAACATTACCCATCATCATTTTCTCTGCATTTCTGCACCAACAATTCCGATTCAAACCCATTTGCAGTTTCATACCTTATCAACAAATTTGGCTTCTCCCCACAATCTGCTTCCAGACTCACCTCCACTCACCGTCTTAAATTTAAGACTGCCAAAAACCCTGATTCTGTTCTTGCATTCTTTAGAAACCATGGTTTCTCAGAAACCCAATTACGTGATATCATTGCAAAATCACCAGACCTACTTTCCTGCAACCCCTCCAAAAGGGTATTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTAACTCTTACATTGTTGACATTGTTAGTAAGAACCCTAGAATCTTGTCTGCAAGCTTGAAAAATTGTATAGTCCCAACCTATGAATTGGTTTATAGATTCTTGCAATCAGACAATGAAACTATTGGTTGTGTAGTTCGAAATCGAAATTTACTTTGTGACAATCGTGTGCCAAATAACGTAACAATGCTGGTTGAGAATGGAGTGTCCCACTCAAACATTGCAAGATTGTTTCGGACATGGAGTATGGTACTCCACTCACGTGACTTGTTGAAGTTGGTGGAGGAAGTAAAGGATTTGGGGTTTAATCCTTCGAAAATAATTTTTTCTATAGCATTGATTGCCAAAGCATCGGTAACAAAAACATTGTGGAAAGAGAAAGTTGATGCTTTGAAGAAGTGGGGTTGGTCTGACGGAGATGCTCTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACCTCCATTGATAAAATAAATTTAGTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGCTATGGCCATTGCCAAAACACCATATATATTGTCGCTAAGTTTGGAAAAAAGGATTATTCCAAGGGCTGCTGTTGTGCAATTTCTTCTCGATAAAGGTTTGAAAGATAAGATAGCAAGCCCAACTTATCCATTTGTAATGTCTGAGGAGTTGTTTCTTGATATGCTTAAAAAACATTTTAAGGACGAGTCTTCTTATCTTTTAAAGTTGTATGAGCAAAAACTCATGCTTGCGAATATCAGGGACTAG 1176 0.3767 MLKFNSWRHKTLIYYLKGLTSPQTLQFQNPNPIFQHYPSSFSLHFCTNNSDSNPFAVSYLINKFGFSPQSASRLTSTHRLKFKTAKNPDSVLAFFRNHGFSETQLRDIIAKSPDLLSCNPSKRVLPKFQFFLSKGASNSYIVDIVSKNPRILSASLKNCIVPTYELVYRFLQSDNETIGCVVRNRNLLCDNRVPNNVTMLVENGVSHSNIARLFRTWSMVLHSRDLLKLVEEVKDLGFNPSKIIFSIALIAKASVTKTLWKEKVDALKKWGWSDGDALEAFRKKPYCMLTSIDKINLVMSFWVNQMGWDAMAIAKTPYILSLSLEKRIIPRAAVVQFLLDKGLKDKIASPTYPFVMSEELFLDMLKKHFKDESSYLLKLYEQKLMLANIRD 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01786 391 PANTHER CGI-12 PROTEIN-RELATED 52 370 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 SMART mt_12 142 173 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 SMART mt_12 310 344 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 SMART mt_12 241 273 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 SMART mt_12 211 239 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 SMART mt_12 278 309 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 SMART mt_12 106 137 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 Pfam mTERF 191 358 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 Pfam mTERF 92 239 IPR003690 GO:0003690|GO:0006355
Trre3g01786 391 FunFam Mitochondrial transcription termination factor-like 156 373 - -
Trre3g01786 391 Gene3D Transcription termination factor 3, mitochondrial 173 375 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01786 Trre-Chr3 14503466 14504641 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01786 mTERF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01786 K15032 - mtr:25488156 496.123