Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01785 ATGAAGGGAAAATCCTTGATCATCCGCTTTCAACGCAATACTATCAATCAATCATATCTCAACAAGACATTTTCACAATCCCCAAACCCTAACCCTCTTTTCCAACATTACCCATCACTATTTTCTCTTCATTTCTGCACCAACACTTCCAATGATTCAACCCCATTTCCTGTATCCTACCTCATCCACAATTTTGGAATCTCACCACAATCTGCTTCCAAACTCACCTCAACCTTTCGTCTTAGGACTGCCCAAAAACCTGATTCAATTCTTAATTTATTTAGAAACCTTGGTTTCTCAGATTCCCAACTTCGCGATATGATTCTGAAGGAACCAAGGCTACTTTCCTGTGAGCCCTCCATAAGGGTGTTACCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAAATATGACATTGTTAATTTTGTCAGTAAGAACCCTAGAATCTTGTCTGCAAGCTTGAAGAATTGTATAGTCCCAACCTATGAATTGCTTTATAGATTCTTGCAATCAGACAATGATACTATTGCTTGTGTAATTCAAAATCGAAATTTACTTTGTGAAAATATTGTGACACATAACATCACAATGTTGGTTGAGAATGGTGTGGCCAATTCAAACATTTCAAGAATGCTTCGGCTATGTGGTCGGATATTCCACTCAAGTGACTTGTTGAAGTTGGTGGATGATGTAAAGGATTTGGGATTTAATCCTTCGAAAATAACTTTTTCCGTAGCATTGATTGCTAAAGCATCTGTAACCAAGACCTTGTGGAAGGAGAAAGTTGATGCCTTCAAGAAGTGGGGTTGGTCTGATGAAGATGCTCTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACTTCCATTGATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGCTATGGCTATTGCCAAGAAACCATATATTTTGACGTTAAGTTTGGAAAAAAGGATCATTCCGAGGGCTGCAGTTGTGCAATTTCTTCTCAATAAAAGTTTGATAAATAAGAAAGCAAGCTTAACGCATCTATTTGTAGTGCCCGAGAAGTTGTTTCTTGATATGCTTATAAGACGTTTTAAGAACGAGTCCTCTTATCTTTTAAAGTTGTATGAGGAAAAACGAAATCATGCATAG 1161 0.3704 MKGKSLIIRFQRNTINQSYLNKTFSQSPNPNPLFQHYPSLFSLHFCTNTSNDSTPFPVSYLIHNFGISPQSASKLTSTFRLRTAQKPDSILNLFRNLGFSDSQLRDMILKEPRLLSCEPSIRVLPKFQFLLSKGASKYDIVNFVSKNPRILSASLKNCIVPTYELLYRFLQSDNDTIACVIQNRNLLCENIVTHNITMLVENGVANSNISRMLRLCGRIFHSSDLLKLVDDVKDLGFNPSKITFSVALIAKASVTKTLWKEKVDAFKKWGWSDEDALEAFRKKPYCMLTSIDKINLVMSFWVNQMGWDAMAIAKKPYILTLSLEKRIIPRAAVVQFLLNKSLINKKASLTHLFVVPEKLFLDMLIRRFKNESSYLLKLYEEKRNHA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01785 386 PANTHER CGI-12 PROTEIN-RELATED 56 367 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 Pfam mTERF 190 360 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 Pfam mTERF 91 234 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 Gene3D Transcription termination factor 3, mitochondrial 172 371 IPR038538 -
Trre3g01785 386 SMART mt_12 210 238 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 SMART mt_12 309 343 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Trre3g01785 386 FunFam Mitochondrial transcription termination factor-like 155 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01785 Trre-Chr3 14498082 14500911 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01785 mTERF 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01785 K15032 - mtr:25488156 487.648