Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01784 ATGTTGAACTTCAATTCATGTCGCCATAGAACCCTAATCTATCTCAAAGCTTTAAAATCCCCAAATTCATCACCATTTTCTCTTCATTTCTGCACCAACACTTCCAATGATCCAACCCCATTTCCTGTCTCCTACCTCATCCACAATTTTGGAATCTCACCACAATCTGCTTCCAAACTCTGTTCCACCAACCGTTTTAAGTTTAAAACCACCCAAAAACCCAACAATGTTCTCACATTCTTTAGAAATCACGGTTTCTCAGATTCCCAACTTCGCGATATGATTCCCAAGGAACCTGAATTACTTTCCTGCAATCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTAAATCGGACATTGTTAAACTTGTCAGTAAGAACCCTATGGTTCTGTCTCCGAGCCTCGAGAATCGTATAATCCCAACCTATGAATTGCTTTATAGATGTTTGCAATCTCATAAGGAAACTATTGATTGTGTAATTGGAAATCCGAGTTTATTTTGTGATCGTAATGTGAAACGTAACATCAAAATGCTGATTGCGAATGGAGTGGCTGAAGGGAACATTGCAAGATTGCTTCGAGACCGTAGTAGGATATTCAAGTCTAAGGACCTTCTGAAGTTGGTGGAGGAATTGAAGGATTTGGGGTTTAATCCTTTGAAAACAAGTTTCGGTGTAGCATTTAAAGTTGATGCCTTGAAGAAGTGGGGTTGGTCTGATGAAGATGCTCATGAAGCATTTAAAAAGAAACCTGATTGTATGTTAGTATCTATTGACAAGATAAATTTAGTGATGAGTTATTGGGTTGAAAAGTTAGGTTGGGATATTGCCAGAAAACCATATATTTTGACAGTAAGTTTGGAAAAAAGGATCATTCCGAGGTCTGCGGTTGTGCAATTTCTTCTCAATAAAGGTTTGATAAATAAGATTGCAAGCTTACCGCATCTATTTGTAGTGCCTGAGAAGTTGTTTCTTGATATGCTTATAAAACGTTTTAAGAACGAGTCCACTTATCTATTAAAGTTGTATGAGGAAAAACGAAATCATGCATAG 1074 0.3771 MLNFNSCRHRTLIYLKALKSPNSSPFSLHFCTNTSNDPTPFPVSYLIHNFGISPQSASKLCSTNRFKFKTTQKPNNVLTFFRNHGFSDSQLRDMIPKEPELLSCNPSKRVLPKFQFLLSKGASKSDIVKLVSKNPMVLSPSLENRIIPTYELLYRCLQSHKETIDCVIGNPSLFCDRNVKRNIKMLIANGVAEGNIARLLRDRSRIFKSKDLLKLVEELKDLGFNPLKTSFGVAFKVDALKKWGWSDEDAHEAFKKKPDCMLVSIDKINLVMSYWVEKLGWDIARKPYILTVSLEKRIIPRSAVVQFLLNKGLINKIASLPHLFVVPEKLFLDMLIKRFKNESTYLLKLYEEKRNHA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01784 357 Pfam mTERF 236 331 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 Pfam mTERF 78 225 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 PANTHER CGI-12 PROTEIN-RELATED 43 338 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 Gene3D Transcription termination factor 3, mitochondrial 174 343 IPR038538 -
Trre3g01784 357 Gene3D Transcription termination factor 3, mitochondrial 45 173 IPR038538 -
Trre3g01784 357 FunFam Mitochondrial transcription termination factor-like 142 343 - -
Trre3g01784 357 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 SMART mt_12 197 225 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 SMART mt_12 283 314 IPR003690 GO:0003690|GO:0006355
Trre3g01784 357 SMART mt_12 251 282 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01784 Trre-Chr3 14484948 14486021 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01784 mTERF 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01784 K15032 - mtr:25488156 449.899