Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01782 ATGTTGAAGTTCAATTCATGGCGCCACAAAACCCTAATCTATTATCTCAATAAGACATTACAATCCCCAAACCCTAACCCTATTTTCCATCATTACCCATCACTATTTTCTCTTCATTTCTGCACCAACACTTCAGATTCAACCTCATTTGCAGTTTCCTACCTCATCAACAATTTTGGGTTTTCCCCAAAATCTGCTTCCAAACTTTGCTCCACTTACAATGTTCGTTTCAAGACTGATCAAAAACCTGATTCAATTCGTAATTTCTTTAGAAACCATGGTTTCTCAGACACCCAATTACATCATATCATTGCAAAATTACCATGGCTACTTTCCTGCAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTTACATTGTTGACATTGTCTGTAAGAACCCTGTAGTCCTGTCTGCAAGCCTCAAGAATCGTATAGTCCCGGCATATGAATTGGTTTATAGATACTTGCAATCAGACGAAGACACTATTGCTTTGTTGAATTACAATCCAATTATCTTTGGATCGAGTAATGTGGTGCATAACATCAAAGTGCTGACTGAGATTGGAGTAACCGATTCAAATATCGCAAGATTGCTTCGGACTTGTACTAAGTTATTCTACAGAAAGGACTTGCATGAGTTGGTGGAGGAATTGAAAGATTTGGGGTTTGATCCTCCGCGGTCAATTTTCTCAATAGCATTGATGGCCAAATCATCGGTATCGAAAACCTTGTGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTGATACAAGCATTTAGAAAGCAACCTCATTGTATGCTAACTTCCATCGATAAAATTAATTTAGTGATGAGCTATTGGGTTAATCAGTTGGGTTGGGATGCTATGGATATTGCCAAAGTGCCAAGGGTTTTTGGGGCCAGTCTGGAGCAAAGGATCATACCAAGAGCCTCGGTTGTGCAATATCTTTCGAAGAAAGGTTTGCTAAAAAAGGAAGCAAGTTTAACTTCTCCATTTGTAGTCAAGGAGGAGATTTTCCTTGACATAAAAAATGAAGCTTGCACAAACCAAGGAAAAAACTGGCATGATATGAACAAATTTTCAGGTTTACACAATTTCCTGAGGAAGGCTTATATGATTTAG 1173 0.387 MLKFNSWRHKTLIYYLNKTLQSPNPNPIFHHYPSLFSLHFCTNTSDSTSFAVSYLINNFGFSPKSASKLCSTYNVRFKTDQKPDSIRNFFRNHGFSDTQLHHIIAKLPWLLSCNPSKRVLPKFQFFLSKGASTSYIVDIVCKNPVVLSASLKNRIVPAYELVYRYLQSDEDTIALLNYNPIIFGSSNVVHNIKVLTEIGVTDSNIARLLRTCTKLFYRKDLHELVEELKDLGFDPPRSIFSIALMAKSSVSKTLWKEKVDAFKKWGWSDEDVIQAFRKQPHCMLTSIDKINLVMSYWVNQLGWDAMDIAKVPRVFGASLEQRIIPRASVVQYLSKKGLLKKEASLTSPFVVKEEIFLDIKNEACTNQGKNWHDMNKFSGLHNFLRKAYMI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01782 390 Pfam mTERF 250 356 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 Pfam mTERF 88 234 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 Gene3D Transcription termination factor 3, mitochondrial 158 361 IPR038538 -
Trre3g01782 390 PANTHER CGI-12 PROTEIN-RELATED 47 358 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 SMART mt_12 137 169 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 SMART mt_12 206 234 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 SMART mt_12 173 201 IPR003690 GO:0003690|GO:0006355
Trre3g01782 390 FunFam Mitochondrial transcription termination factor-like 151 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01782 Trre-Chr3 14465060 14467223 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01782 mTERF 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01782 K15032 - mtr:25488156 465.307