Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01781 ATGTTGAAGTTCAATTCATGGCGCTACAAAACCCTAATCTATTATCTCAACAAGACATTACAATCCCCAAACCCTAACCCTCTTTTACAACAATACCCATCACTATTTTCTCTTCATTTCTGCACCAACACTTCCGATGATTCAACCCCATTACCTGTTTCCTACCTCATCAACAATTTTGGGTTTTCCCCAAAATCTGCTTCCAAACTTTGCTCCACTTACAATGTTCGTTTCAAAACTGCTCAAAAACCTGATTCAGTTCTTAATTTCTTTAGAAACCATGGTTTTTCAGACACCCAATTACATCATATCATTGCAAAATCACCATGGTTACTTTCCTGCAACCCCTCCAAAAGGTTGTTGCCAAAGTTTCAATTTTTACTTTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTTACTAAGGCACCCATGGTCTTGTGTCCAAGTCTGGAGAATCATATAGTCCCAACCTATGAATTGTTGTATAGATTCTTGCAATCTGACAAGGATGTTATTGCTTGTGCAATTGGCAATCCAGCTTTACTTACTCACCATTTTGTATCACATAACATTAGAGTGTTGATTGAGAATCGAGTCATAGACTCAAACATTTCAAAATTGCTTCGGATTAAGACCAGGGTAATTATCATACCCACAAATGAATTTTTGAATGTGCTGGAGGAATTGAAGGATTTGGGGTTTAATCCTTCACAATCATTATTCTATGTAGCACTGATTGCCAAAATAACGGTAACCAAAACCTTGTGGAAAGACAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCGGATGAAGATGTTTTAGAAGCATTTAAAAAGCAGCCTCATTGTATGTTAACATCCATTCATAAAATTAATACAGTAATGAGCTTTTGGGTCAATCAGTTAGGTTGGGATGCTAGGGCCATTGTCAGACTACCAAGGGTTTTGGGGTCCAATCTAGAGAGAAGGATCATACCAAGGGCTGTCGTTATGCAATATCTTCTAAAAAAAGGTTTACTAAAAAAGAAAGCAAGCTTAACTACTCCATTTGTAGTCAGCGATAAGTTGTTCTTAGAAAGACATATAAACCGTTATAAGGAAGAGGCATCTTATTTATTAAAGCTTTATGAAGAAAAACTAGATCTTGCCCATGCCAGTGATAAAACTGATGCTATGTCATGA 1188 0.3695 MLKFNSWRYKTLIYYLNKTLQSPNPNPLLQQYPSLFSLHFCTNTSDDSTPLPVSYLINNFGFSPKSASKLCSTYNVRFKTAQKPDSVLNFFRNHGFSDTQLHHIIAKSPWLLSCNPSKRLLPKFQFLLSKGASNSDIVNLVTKAPMVLCPSLENHIVPTYELLYRFLQSDKDVIACAIGNPALLTHHFVSHNIRVLIENRVIDSNISKLLRIKTRVIIIPTNEFLNVLEELKDLGFNPSQSLFYVALIAKITVTKTLWKDKVDAFKKWGWSDEDVLEAFKKQPHCMLTSIHKINTVMSFWVNQLGWDARAIVRLPRVLGSNLERRIIPRAVVMQYLLKKGLLKKKASLTTPFVVSDKLFLERHINRYKEEASYLLKLYEEKLDLAHASDKTDAMS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01781 395 PANTHER CGI-12 PROTEIN-RELATED 52 370 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 Gene3D Transcription termination factor 3, mitochondrial 71 189 IPR038538 -
Trre3g01781 395 Gene3D Transcription termination factor 3, mitochondrial 190 377 IPR038538 -
Trre3g01781 395 FunFam Mitochondrial transcription termination factor-like 152 371 - -
Trre3g01781 395 Pfam mTERF 88 236 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 Pfam mTERF 252 360 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 SMART mt_12 207 237 IPR003690 GO:0003690|GO:0006355
Trre3g01781 395 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01781 Trre-Chr3 14460067 14461254 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01781 mTERF 6.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01781 K15032 - mtr:25488156 473.011