Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01769 ATGGATAAGATTGAAATTTGTCCAAAATTTCGAGCTGCTTGGAATGATGAGTTACAGAATGATAACTGTGGATATTTGGTACATCCTACTGGAAATGCAGTATTCCTTGAACTACACCTAGAAGGGGGAAACTGTTACATGACTCCAGGAAAAGTTGTTTCAATTTTATTTGGAATTAGAGAACCTACGGAGGTTATTCTAACCTACAAAATCCATGACAATTTTTTTAATTTAAATTTTATCCAACAAGGTGTTATTGACATCTCAAGTGACGATGAATCGGATGATGAATATGTAATTCAATCCCATAATTATATTTTACATGCCTTTGAGAATGATGGTGTCTTTGGTTGGGAAAAGATAATGACTGAAGCTTCTGCAAATAACAAAAAAAATCAGGTTTTGCACATTCCACCACAAACAGCTGAGTATGTACTTAGAGGTAAGAAAAATATTACAATCAAAACACTGCACAATTTAAATGGAACCAATTTGACCATCACAACTTACACAAGGCCAAATGGAAGGAAGGACATGTACTTCACTGAAGGATGGTATGAATTCAAGCAAGCTAACAGACTTGAAAAGGGAGACAAGCTGCAATTTAAACTTTCTGATCCACCTAAAGTAATTGTTATCAGCATTGTTCGCGAAAACAATTGA 663 0.3469 MDKIEICPKFRAAWNDELQNDNCGYLVHPTGNAVFLELHLEGGNCYMTPGKVVSILFGIREPTEVILTYKIHDNFFNLNFIQQGVIDISSDDESDDEYVIQSHNYILHAFENDGVFGWEKIMTEASANNKKNQVLHIPPQTAEYVLRGKKNITIKTLHNLNGTNLTITTYTRPNGRKDMYFTEGWYEFKQANRLEKGDKLQFKLSDPPKVIVISIVRENN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01769 220 SUPERFAMILY DNA-binding pseudobarrel domain 116 213 IPR015300 -
Trre3g01769 220 Gene3D - 102 220 IPR015300 -
Trre3g01769 220 ProSiteProfiles B3 DNA-binding domain profile. 120 219 IPR003340 GO:0003677
Trre3g01769 220 CDD B3_DNA 120 217 IPR003340 GO:0003677
Trre3g01769 220 SMART B3_2 121 219 IPR003340 GO:0003677
Trre3g01769 220 Pfam B3 DNA binding domain 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01769 Trre-Chr3 14380095 14381528 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g01769 B3 3.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01769 - K06016 tpra:123886203 205.297