Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01768 ATGTTCAATACACCATCACCTTATCTCTATCTCAAAAACAACTTAACTTTACCTCTTATCATCCATCATCACTTTCCATCACCATCTTCTCTGCATTCTTCCACCAACACTTCTGATGATTCAACCTCTTTTGCAGTTTCATACCTCATCAACAATTTTGGATTCTCACCACAATCTGCTTCCAAACTTTGCTCCACCTACCATCTTAGATTTAAGACCCCCCAAAACCCTGATTCTGTTCTTGCATTCTTTAGAAACCATGGTTTCTCAGACACCCAATTACGCGATATCATTGCAAAGTCACCAGACCTACTTTCCTGCAACCCCTCCAAAAGGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTGACATTGTTAACCTTGTCAGTAAGAATCCCAGAATCTTGTCTCTAAGCTTGGAGAATCATATAGTCCCAATCTATGAATTGCTTCATAGATTCTTGCAATCAGAAGAGGACACTGTTGCTATTGCAATTCACAAGCCATATTTACTTAGTTACAATCGTGTGCCAGATAACATCACAATGTTGGTTGAGAATGGAGTCAAGGACTCAACCATTGTAAGATTGCTTCGGTGGCAATCTCGTGTATTGACTTCGAGTAAATGTTACATGTTGGAGTTAGTGGAGGAATTGAAGGATTTGGGTTTTAATCCTTCGAAGATAACCTTTGGTATAGCATTGGCAGCCAAAGAATCTGTAAACAAAACATTGTGGAAAGAGAAAGTTGATGCCTTTAAGAAGTGGGGTTGGTCTGATGAAGATGTTCTCGAAGCATTTAGACGGCAGCCACACTGTATGTTAGCATCCATTAAAAAGATTAATTTAGTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGTGCTTGCCCTTGCAAAAGGACCGTCGGTTTTTTCAGTTAGTTTGGAAAAAAGAATCATTCCAAGGGCCCCCGTTTTGCAGTTTCTGCTGAAGAAAGGTTTGCGAAAACAGAATGCAAGCTTAACTTATCCATTTATAGTCGGCGATAAGATGTTCCGTGACAAATTTATAAACCGTTATGAGGAGGAGTCATCTTATCTATTACAGCTTTATGAAGAAAAACTGACTCTTGCACACACCAGGGAGGACAAAACTGACATGTCGTGA 1167 0.3993 MFNTPSPYLYLKNNLTLPLIIHHHFPSPSSLHSSTNTSDDSTSFAVSYLINNFGFSPQSASKLCSTYHLRFKTPQNPDSVLAFFRNHGFSDTQLRDIIAKSPDLLSCNPSKRVLPKFQFFLSKGASTSDIVNLVSKNPRILSLSLENHIVPIYELLHRFLQSEEDTVAIAIHKPYLLSYNRVPDNITMLVENGVKDSTIVRLLRWQSRVLTSSKCYMLELVEELKDLGFNPSKITFGIALAAKESVNKTLWKEKVDAFKKWGWSDEDVLEAFRRQPHCMLASIKKINLVMSFWVNQMGWDVLALAKGPSVFSVSLEKRIIPRAPVLQFLLKKGLRKQNASLTYPFIVGDKMFRDKFINRYEEESSYLLQLYEEKLTLAHTREDKTDMS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01768 388 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Trre3g01768 388 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Trre3g01768 388 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Trre3g01768 388 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Trre3g01768 388 Gene3D Transcription termination factor 3, mitochondrial 52 182 IPR038538 -
Trre3g01768 388 Gene3D Transcription termination factor 3, mitochondrial 183 369 IPR038538 -
Trre3g01768 388 FunFam Mitochondrial transcription termination factor-like 145 364 - -
Trre3g01768 388 Pfam mTERF 81 233 IPR003690 GO:0003690|GO:0006355
Trre3g01768 388 Pfam mTERF 249 352 IPR003690 GO:0003690|GO:0006355
Trre3g01768 388 PANTHER CGI-12 PROTEIN-RELATED 41 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01768 Trre-Chr3 14370010 14371176 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01768 mTERF 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01768 K15032 - mtr:25488156 488.034