Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01735 ATGTTACTGAAAGTTCTCTTTTATTTAGAAACATATACCGGTGATATTGATATTGTTGAGAATGAATTTCTTGAACAGGAGGTAGCCATGCTTAGTCCTGAAGGTGAACTGAAAATAAGTTTCGGCTATCAATGCAATAGTCACAAAGGCATCCCTTGCAAAGTTGCCAATGGCTGCAAAGTCATCCCTGAATTCCGAAGAACGAGCAGTTTCTCTTGCTTGTCAGGTGCTGCCATAAGTGCAAATGCTACACTTGCCAACACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCGAATTTGGACTCTCCCAATTCATTTCGGCGGGTACCCTCTTCGCCAAATTTTGGAGAGACACTATCATCTTCTCTCCATAGTAGTTTGTCAAACCTAAGTTGCAGCCCGTCCAGTCCAAGTAATATGCTTGAAAATGACCCTTGTTCGTTAAGATTCACGAGCGCCCTTTCTAGAAATGATTGTTTCCATAATGCTACGGAAGTACAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCCGAAGAAAAGGGGTGGCTTTTTTGTGCAATTTATGACGGCTTTAATGGGAGAGATGCAGCGGACTTTCTCGCTTGTACCCTTTATGACTCTATTGTATCTTACCTAAATACAATAGATTGGGATTCAAAACCAAATTCCATCAACAACGCTTCTGACAGCGAGTGTTTGGATGATAGTCGTATTCTTGACGGACGCCAATCTTCATCGAGTAAATCATTTTCGCATGTGGTACTTGATAACCTCAAACACATTCTTAGTCAGGTCGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTCTCAATTGGATCTTGTGTTTTACTCGTGCTTCTTCACGGGGATGATTTGTGTACACTCAATCTTGGGGACAGCAGAGCAGTGCTTGCGACATGCAGTACAAGTAACGGAATGAACGGGAATGAGAGATTGAAAGCTATTCAGCTTACCGATAGTCATACTGTTGACAATGAAGATGAAAGAACTCAACTTCTTGCTAGTCATCCTGATGATCCTAAGACCATTGTATCAGGGAGAGTGAAAGGAAAATTGAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAATTCTGAATGATGCATTAATGGGAATCCTTCGAGTTCGTGATCTTAAAAGTCCGCCATATGTTTCAACTGAACCATCACTGAATGTGCATAAGATCTCTACTTCTGATCAATTTGTTATAGTAGCAAGTGATGGTTTATTCGACTTCTTCAGCAATGAGGAAGCAGTAAATCTCGTCGAGTCTTACATCTTAAGCAATCCTGATGGTGATCCAGCTAAATTTCTCATTGAAGAATTAGTAACAAAAGCAGCTGATTCAGCAGGTTTCACCACGGAGGAGTTGATGAATGTTCCTGATGGGAGGAGGAGAAAGTATCACGATGATGTCACTGTAATGGTGATAATCCTTGGGATGAATAAACGAACTTCAAAGGCGTCAATTTGCATCTAA 1560 0.4115 MLLKVLFYLETYTGDIDIVENEFLEQEVAMLSPEGELKISFGYQCNSHKGIPCKVANGCKVIPEFRRTSSFSCLSGAAISANATLANTNICNGVIGEEILPNLDSPNSFRRVPSSPNFGETLSSSLHSSLSNLSCSPSSPSNMLENDPCSLRFTSALSRNDCFHNATEVQVAGGAAGEDRVQAVCSEEKGWLFCAIYDGFNGRDAADFLACTLYDSIVSYLNTIDWDSKPNSINNASDSECLDDSRILDGRQSSSSKSFSHVVLDNLKHILSQVENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGDDLCTLNLGDSRAVLATCSTSNGMNGNERLKAIQLTDSHTVDNEDERTQLLASHPDDPKTIVSGRVKGKLKVTRAFGVGYLKKKILNDALMGILRVRDLKSPPYVSTEPSLNVHKISTSDQFVIVASDGLFDFFSNEEAVNLVESYILSNPDGDPAKFLIEELVTKAADSAGFTTEELMNVPDGRRRKYHDDVTVMVIILGMNKRTSKASICI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01735 519 Pfam Protein phosphatase 2C 256 474 IPR001932 -
Trre3g01735 519 CDD PP2Cc 176 506 IPR001932 -
Trre3g01735 519 SUPERFAMILY PP2C-like 174 507 IPR036457 -
Trre3g01735 519 PANTHER PROTEIN PHOSPHATASE 2C 165 504 IPR015655 GO:0004722|GO:0006470
Trre3g01735 519 ProSiteProfiles PPM-type phosphatase domain profile. 163 506 IPR001932 -
Trre3g01735 519 Gene3D - 133 515 IPR036457 -
Trre3g01735 519 SMART PP2C_4 154 504 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01735 Trre-Chr3 14103765 14106043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01735 33 519 PP2C-type Phosphatase Gene Family AT3G16560 64.848 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01735 - - mtr:112419487 834.328