Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01729 ATGGCGGAATCGGCGGCGATAAATAGTAAGCAGCGAGACTTCCCTTTGTCACGCGTTAGTCAGCTCTCTTCACCTTCTTCTTCTGCTTCGCCGGGGATTGTCCGCCTCACTACCGACGCTCTTCAAATTCACCACGATTCTCACCAGATTGCTCTCGATGTTAATCTTCAAGATATTCAGATATTCAGATTAGGTCCTGTTCAATCGGTTTGCATGGTGGAAGGTTCTGATGCTGGCAAACAGACATCTTATTCCAGGGGAGTTGCTATACAATTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTATATTCCAACAATGGAAGAAGGAATTCAATGTTCAAGGAGGGAACTTAACGAATGGAACTAATGTAATGACTTCCAAAAGCAAATTTGATGAAAAGATAGAGCCATCTTCTGCAAAAATGTATTTTCATTATTATGGACAACTTCTTCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGTACATATTATGCTGCTGTTATGGAGAATCGCACTGATTTCTTTGGCCGTGTAGTGGTTGATGTTGGCGCCGGTAGTGGTATTTTGTCATTATTTGCTGCTCAGGCAGGTGCAAAACATGTATATGCAATAGAAGCATCTGAAATGGCAGAATACGCACGCAAACTTATAGCTGGGAACCCACTACTGGGTCAACGAATTACCGTTATCAAAGGCAGAGTTGAGGATGTTGTATTGCCAGAGAAAGCCGATATTCTGATATCTGAGCCCATGGGCACCTTGTTAGTTAACGAAAGAATGCTGGAGTCTTATGTTATTGCCAGAGATAGGTTTCTTACCCCTAATGGCAAAATGTTTCCTACATCGGGAAGGATTCACATGGCACCTTTCAGTGATGAATATTTGTTTGTTGAAATTGCTAGTAAGGGGCTGTTCTGGCAGCAGCAAAACTATTATGGTGTTGATTTGACGCCCTTGCACGGGACTGCCTATCAAGGATACTTCTCTCAGCCTGTTGTGGATGCTTTTGATCCAAGGTTGTTAATATCTCCTCCTATGTTCCATGCGATGGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAAATTGACATTCCTCTCAGATTTATAGCCAGTGTGGGTGCCAGATTACATGGTTTGGCATGTTGGTTTGATGTACTGTTCAATGGAAGTTCTGTGCAAAGGTGGCTTACCACTGCCCCTGGTTCACCGGTAACTCATTGGTATCAGTTACGCTGTGTTCTCTCCCAGCCTATTTATGTCATGGCAGGGCAAGAAATTACTGGCAGACTGCACTTGATTGCTCACAGTGCACAGAGTTACACAATCTATTTAACCTTGTCAGCTAAAATGTGGGGGCCTGGCGCTGAGCAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGATCTGAAAGAACCATACTATAGAATGTCTCAACCGCAAGCTTATCCATCAACCCAAGATCATCAACCTCAACCATTTTTATCGACACAGGATGTAAAGAACCAATCTCAGGATTTGGATGACACCGAGATCATGCAACAGTCTTCACCTTATTCACGTGTTCAGATTAGTTGA 1593 0.4294 MAESAAINSKQRDFPLSRVSQLSSPSSSASPGIVRLTTDALQIHHDSHQIALDVNLQDIQIFRLGPVQSVCMVEGSDAGKQTSYSRGVAIQFRNEEESEAFHCIFQQWKKEFNVQGGNLTNGTNVMTSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENRTDFFGRVVVDVGAGSGILSLFAAQAGAKHVYAIEASEMAEYARKLIAGNPLLGQRITVIKGRVEDVVLPEKADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPTSGRIHMAPFSDEYLFVEIASKGLFWQQQNYYGVDLTPLHGTAYQGYFSQPVVDAFDPRLLISPPMFHAMDFTKIKEEELYEIDIPLRFIASVGARLHGLACWFDVLFNGSSVQRWLTTAPGSPVTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHSAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPSTQDHQPQPFLSTQDVKNQSQDLDDTEIMQQSSPYSRVQIS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01729 530 Gene3D - 286 495 - -
Trre3g01729 530 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 147 458 IPR029063 -
Trre3g01729 530 Pfam Ribosomal protein L11 methyltransferase (PrmA) 180 253 - -
Trre3g01729 530 CDD AdoMet_MTases 183 283 - -
Trre3g01729 530 MobiDBLite consensus disorder prediction 507 530 - -
Trre3g01729 530 Gene3D Vaccinia Virus protein VP39 123 284 IPR029063 -
Trre3g01729 530 FunFam Probable histone-arginine methyltransferase CARM1 286 493 - -
Trre3g01729 530 FunFam Probable histone-arginine methyltransferase CARM1 124 284 - -
Trre3g01729 530 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 137 452 IPR025799 GO:0016274|GO:0018216
Trre3g01729 530 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 100 467 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01729 Trre-Chr3 14044852 14050750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01729 144 434 C2H2 Transcription Factor Family AT3G12270 33.657 1.97e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01729 K05931 - gmx:100818828 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01729 3 14044852 14050750 Trre3g01729 3 14044852 14050750 ECH
Trre15g04838 15 58621775 58627745 Trre3g01729 3 14044852 14050750 PCT