Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01720 ATGTCTTCTTCTTTTTCATCTTCATGGCTTATTTCACCTTCATGCACTCTTATAGATTCATCTTCTTCTTCTACACCAAATATCATACTTCAATGGTTAACTTTTCTTTTCCTATCTCCATGTCCTCAAAGAGTTCTTATTTCTGCTCTTGATTCCTTGTTTTTGCTTTCTCTCTTAGCTTTTGCAGCTCATAAACTTTACTCAAGGTTCAATTCAAGAACAAACTCTACCTCTTCAATAACAAAACCACTTTTGCAGGAGAAAGATTCTGATTATAGAATCACTTTTTGGTTCAAATTATCCTTGTTGGTAACTATCCTTTTGGCTGTAGCTTATGCTGTTTTAGGAATCTTGGCTTTTACTCAAACAAAAGTTTCTTCATGGAAACAAATAGAAGCACTTTTTAGGTTGTTTCAAGCAATAGTTAACATAGTGATAGTGATTCTATTGGTACATGAGAAAAAGTTCAAATCTTCTAAACACCCTTTATCACTAAGAATCTATTGGATAGGAAACTTTGTGATTGCTACTTTGTTTTCTGTTTCGGCTATTGTTCGAATGATAACTGTTGATGAAGCAAGTTTGGAGATTAGTTTGAGAATAGATGATATATTCTCATTGGTTAATCTTCCATTATCTTTGTTGTTTTTTGTGATAGCTATAAGAGGTTCATCAGGGATTCATGTGATAAGAATATCTGATGTAGTAGTATCAACATATCGATCGATTTCAACCGATAGAACTTTGAGTCCTTATGCTAGTTCTTCATTTTTGTCCAAAACAGTTTGGTATTGGATGAATCCTTTAATCAATAAAGGTTACAAAGAACCTCTTAAACTAGAAGATGTTCCTTCACTTCCACTTGATTTTAGAGCAGAAAAAATGTCAGAACTTTTCCGAAACAATTGGCCGAAACCAGAAGAAAACAGTAAACATCCAGTTGGATTAACCCTTTTTAGGTGTTTTTGGAAACAATTAGCTTTCACTGGCTTTCTTGCAATCATTAGGCTTTGTGTTATGTATGTTGGTCCGTTGTTGATTCAAAGTTTTGTCGATTTCACATCGAGGAAAGATAGTACTGCAAGTGAAGGTATTGTTTTGATATTGATCCTTTTTGCAGCAAAATCAGTTGAAGTACTTAGTGTTCATCAATTCAATTTCCATTCTCAGAAACTCGGTATGCTTATTCGTTCGAGCATAATCACTTCGGTTTACAGAAAGGGTTTAAGGTTGTCAAGTTCTTCAAGACAAGCTCATGGAACTGGACAGATTGTTAACCACATGGCTGTTGATGCTCAGCAACTCTCAGATTTGATGATGCAGTTTCATCCTATATGGTTGATGCCATTACAAGTTGCTGCAGCATTGGCTCTTATGTATAGCTATGTCGGTATATCTGTTCTTGCAGCATTGCTTGGAACAACTATTGTGTTTCTCTTCACGCTTTATCGAACGAAGAGTAGTAATAGTTTCCAGTTTCGGATAATGACTAGCCGTGATTCGAGGATGAAGGCGACAAATGAGTTGCTTAATAACATGCGTGTGATTAAGTTTCAAGCTTGGGAAGAGTATTTTGGTAACAAAATTCAAAAGTTTCGTGAAACCGAGCATGGATGGATTGGTAAATTCTTGTACTATTTTGCTGTTAACATGGGAGTTTTGTCTACTGCTCCATTAACCGTAACTGTTCTTACCTTTGGAACTGCAACTTTTATCGGAATGCCTTTGAATGCCGGCACTGTTTTCACAATAACTTCGATTATCAAGATACTTCAAGAGCCTGTAAGGACTTTTCCTCAAGCTCTTATCAATATTTCTCAAGCAACAATTTCTTTAGGGAGGTTGGACGCATTCATGAGTAGTACGGAAATGGACGCGAATGCAGTGCAAAGAGAGGAAAATTGTGACGGTGACATAGCTGTCGAGATAAAAGATGGGAAATTCTCTTGGGATGATAAGGATGAGAATGTAGCTTTGACGGTCAATGAGTTGGTAATTAAGAAAGGGGATCATGCTGCTGTTGTAGGAACTGTTGGATCCGGAAAGTCTTCGTTACTCGCTTCTGTGCTGGGAGAAATGTTCAAGATCTCAGGAAAGGTTAGAGTATGTGGGACGACGGCGTATGTAGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGTTTACCATTGAACATTGAAAAGTACAGGGAAGCTATAAGAGTGTGTTGCCTTGAAAAGGATCTTGAAATGATGGAAGATGGTGACGAAACCGAGATTGGAGAGCGTGGTATTAACCTCAGTGGCGGCCAGAAACAACGCGTACAGCTTGCTAGAGCTGTTTATCAAGACACTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCTCAAACAGGATCATTTATTTTTAAGGAATGTATTTTGGGAGCTCTCAAAGATAAGACTGTTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGATTCTATAATGGTGATGCGCGAAGGGAAAGTAGTGCAAAGTGGAAAATATGATGAACTTCTCAAAGCAGGCCTAGACTTTGGTGCACTTGTGGCAGCTCATGAATCTTCTATGGAAATTGCAGAAACAAGTGATCAAACTGGTGATGATTCAGCTCAATCTCCAAAACTAGCTCGCATCGCTTCGAAAGAAAAAGAAACCGCCGGTGAAAAACAGTCTTCTCAAGATCAATCTAAGTCTGATAAAACTGCAGCAAAGCTTGTTGAAGACGAGGAAAGAGAAACTGGACGCGTGAACCTTAAAGTATACAAACATTATTTCACTCAAGCATTTGGATGGTGGGGAATAGCATTAATGGTTGCAATGTCTGTGGCTTGGATGCTTTCATTTTTGGTTGGTGATTATTGGCTAGCAATTGCAACTGCAGAAGATTCTAGGATTGCTTCGTTCACATTCATTATCGTCTATGCTATTATAGCTGTTGTTGCAATCATAGTTGTGATGGCAAGAGCTTTCTTATTTACATATTGGGGTCTAAAGACATCTCAAAGCTTCTTCATTGGAATGCTTCAAAGTATATTACATGCACCTATGTCATTCTTTGATACTACTCCTTCCGGCAGAATTTTGAGTCGTGTATCTACTGATATACTTTGGGTGGATATATCAATTCCAATGTTGGTAAACTTTGTAATGATAGCATACTTATCATTATTCAGTATCCTCATTGTCACATGCCAGAATTCTTGGGAGACTGTCTTCCTATTAATTCCGCTGTTTTGGCTCAACAACTTGTATAGGAAATATTATCTTGCAACTTCTAGGGAATTAACTCGACTTGATTCAATCACGAAAGCTCCAGTGATTCATCACTTTTCAGAGACAATTTCTGGTGTTATGACAATCCGTAGCTTAAGAAAGCAGAAAGCGTTTTCTCAGGAAAACATCGACCGAGTGAATGCAAGTCTAAGAATGGATTTTCATAACAATGGAGCAAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGCATTGCCACACTTTTTATGATCTTCTTGCCAAGTGCTATTGTTAAGCCAGAATTAGTTGGTATGTCTCTATCATATGGCCTAGCTCTAAGTGGTCTCTTATCATTTACCATAACAATGACTTGTTCTGTCGAGAACAAAATGGTTTCAGTTGAAAGGATAAAACAGTTTACAAACCTCCCATCAGAAGCTGCATGGAAAATCGCCGATAAGTCTCCTCCTCAGAATTGGCCTAATCATGGCACTATAGAGTTAAATAATTTACAGGTTAGGTACAGGCCAAACACACCTCTAGTTCTTAAGGGAATCTCTCTAACCATTGAAGGTGGAGAAAAAGTTGGTGTCGTTGGTCGTACAGGAAGTGGAAAATCAACACTTATTCAAGTGTTATTTAGATTAATAGAGCCTTCAGCTGGTAAAATAATCATTGATGGAATCAACATTTCAAATATTGGCCTTCATGATTTAAGGTCGCGTTTCGGAATTATTCCACAAGAGCCTGTCCTCTTTCAAGGAACAGTAAGAACCAACATTGATCCTCTTGGAGTATACTCAGAAGAAGAAATTTGGAAGAGTCTCGAGCGCTGCCAATTGAAAGAAGTGGTGGCTGCAAAGCCTGAGAAACTCGAGGCTTCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGACAAAGACAGCTTCTATGCTTAGGAAGGATCATGCTAAAACGAAGCCAAATACTATTCATGGACGAAGCAACAGCATCAGTCGATTCACAAACTGATGCTGTAATACAAAAGATTATCAGAGAAGACTTTGCGGATCGTACAATTGTTAGCATTGCTCACAGAATACCAACAGTCATGGACTGTGACAGAGTTTTGGTCATAGATGCAGGTTTGGCAAAGGAATATGACAAGCCATCACGTTTGCTTGAAAGGCATTCACTTTTTGCAGCATTGGTTAAGGAGTATTCTAATAGATCAGCTTAA 4509 0.3815 MSSSFSSSWLISPSCTLIDSSSSSTPNIILQWLTFLFLSPCPQRVLISALDSLFLLSLLAFAAHKLYSRFNSRTNSTSSITKPLLQEKDSDYRITFWFKLSLLVTILLAVAYAVLGILAFTQTKVSSWKQIEALFRLFQAIVNIVIVILLVHEKKFKSSKHPLSLRIYWIGNFVIATLFSVSAIVRMITVDEASLEISLRIDDIFSLVNLPLSLLFFVIAIRGSSGIHVIRISDVVVSTYRSISTDRTLSPYASSSFLSKTVWYWMNPLINKGYKEPLKLEDVPSLPLDFRAEKMSELFRNNWPKPEENSKHPVGLTLFRCFWKQLAFTGFLAIIRLCVMYVGPLLIQSFVDFTSRKDSTASEGIVLILILFAAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYRKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMMQFHPIWLMPLQVAAALALMYSYVGISVLAALLGTTIVFLFTLYRTKSSNSFQFRIMTSRDSRMKATNELLNNMRVIKFQAWEEYFGNKIQKFRETEHGWIGKFLYYFAVNMGVLSTAPLTVTVLTFGTATFIGMPLNAGTVFTITSIIKILQEPVRTFPQALINISQATISLGRLDAFMSSTEMDANAVQREENCDGDIAVEIKDGKFSWDDKDENVALTVNELVIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPLNIEKYREAIRVCCLEKDLEMMEDGDETEIGERGINLSGGQKQRVQLARAVYQDTDIYLLDDVFSAVDAQTGSFIFKECILGALKDKTVLLVTHQVDFLHNVDSIMVMREGKVVQSGKYDELLKAGLDFGALVAAHESSMEIAETSDQTGDDSAQSPKLARIASKEKETAGEKQSSQDQSKSDKTAAKLVEDEERETGRVNLKVYKHYFTQAFGWWGIALMVAMSVAWMLSFLVGDYWLAIATAEDSRIASFTFIIVYAIIAVVAIIVVMARAFLFTYWGLKTSQSFFIGMLQSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLVNFVMIAYLSLFSILIVTCQNSWETVFLLIPLFWLNNLYRKYYLATSRELTRLDSITKAPVIHHFSETISGVMTIRSLRKQKAFSQENIDRVNASLRMDFHNNGANEWLGFRLDYMGVVFLCIATLFMIFLPSAIVKPELVGMSLSYGLALSGLLSFTITMTCSVENKMVSVERIKQFTNLPSEAAWKIADKSPPQNWPNHGTIELNNLQVRYRPNTPLVLKGISLTIEGGEKVGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINISNIGLHDLRSRFGIIPQEPVLFQGTVRTNIDPLGVYSEEEIWKSLERCQLKEVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSQILFMDEATASVDSQTDAVIQKIIREDFADRTIVSIAHRIPTVMDCDRVLVIDAGLAKEYDKPSRLLERHSLFAALVKEYSNRSA 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01720 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 864 IPR003439 GO:0005524
Trre3g01720 1502 Gene3D - 636 867 IPR027417 -
Trre3g01720 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Trre3g01720 1502 SUPERFAMILY ABC transporter transmembrane region 316 620 IPR036640 GO:0005524|GO:0016020
Trre3g01720 1502 Pfam ABC transporter transmembrane region 328 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g01720 1502 Pfam ABC transporter transmembrane region 956 1189 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g01720 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g01720 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 860 IPR027417 -
Trre3g01720 1502 CDD ABCC_MRP_domain2 1260 1480 - -
Trre3g01720 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1495 IPR027417 -
Trre3g01720 1502 SMART AAA_5 668 849 IPR003593 GO:0016887
Trre3g01720 1502 SMART AAA_5 1288 1473 IPR003593 GO:0016887
Trre3g01720 1502 Pfam ABC transporter 664 792 IPR003439 GO:0005524
Trre3g01720 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 327 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g01720 1502 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Trre3g01720 1502 FunFam ABC transporter C family member 5 627 873 - -
Trre3g01720 1502 Gene3D - 1245 1496 IPR027417 -
Trre3g01720 1502 MobiDBLite consensus disorder prediction 892 921 - -
Trre3g01720 1502 FunFam ABC transporter C family member 5 910 1243 - -
Trre3g01720 1502 Gene3D ABC transporter type 1, transmembrane domain 909 1243 IPR036640 GO:0005524|GO:0016020
Trre3g01720 1502 Gene3D ABC transporter type 1, transmembrane domain 313 624 IPR036640 GO:0005524|GO:0016020
Trre3g01720 1502 FunFam ABC transporter C family member 10 310 623 - -
Trre3g01720 1502 SUPERFAMILY ABC transporter transmembrane region 944 1242 IPR036640 GO:0005524|GO:0016020
Trre3g01720 1502 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1498 - -
Trre3g01720 1502 CDD ABC_6TM_ABCC_D1 328 615 IPR044746 GO:0140359
Trre3g01720 1502 CDD ABC_6TM_ABCC_D2 943 1237 IPR044726 GO:0140359
Trre3g01720 1502 Coils Coil 1133 1153 - -
Trre3g01720 1502 FunFam ABC transporter C family member 3 1245 1496 - -
Trre3g01720 1502 CDD ABCC_MRP_domain1 641 841 - -
Trre3g01720 1502 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01720 Trre-Chr3 13991506 13998453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01720 641 912 Calmodulin-binding Proteins AT2G36910 30.169 6.03e-27 118