Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01718 ATGCCGCCACAGGGTAATGCCGGAGCAGCCGCCGCGATTTACGATCAAGCTGCCGGCGGCTCCTTGCAAAGTTCGTCAACTGATGCAGGAGATGCTGTCATGGCGCGGTGGCTTCAGTCCGCCGGGTTGCAGCATTTAGGCTCTCCACTTGCTTCATCCGGTATCGATCATCGCCTTCTCCCTAACCTTCTCATGCAGGGTTATGGAGCACAGTCTGCTGAAGAGAAGCAGAGGCTTTTGAAGTTAATGAGAAATTTAAATTTTAATGGGGAATCTGGTTCGGAGCATTATACGCCCAATGCTCAAACTTTGGGTGGAGTAGCTGCATCAGATGGGTTTTATTCTTCTGAGTTTAGAGGGGATTTTGGAGCTGGGCTTTTGGATCTTCATGCAATGGATGACACAGAACTTTTGTCTGAGCATATGATTTCAGAACCTTTCGAACCGTCACCCATGCCTGGAGATACAAGAGTATTTGGAGATGATTTCTATCCAATTAACAGCAAGCTGGAAAAAGAAGCAGATGTTGATGCATCAATTAATTTACCTATGAATGAAAAAGAGAATAGTACAAGGGAGAATAACGTCGCTAAGATTAAAGTTGTGGTACGTAAAAGGCCTTTAAACAAAAAAGAGCTTGCTAAGAAGGAGGATGATGTTGTAACTGTAACTGACAATGCATATTTGACGGTCCATGAACCTAAACTAAAGGTTGATTTGACAGCTTATGTGGACAAGCACGAGTTTTGTTTTGATGCCGTTCTTGATGAGCATGTTACCAATGATGAAGTATACCGAGCTACAGTTGAACCAATTATCCCTACAATTTTTGAACGAACCAAAGCTACCTGTTTCGCTTATGGTCAGACAGGAAGTGGCAAAACATACACAATGCAACCTTTACCACTCAGAGCTGCAGATGACCTTGTTCGACAGTTGCATCAGCCAATTTACCGGAGTCAGAAATATAAATTGTGGCTTAGCTACTTCGAGATATATGGTGGAAAGCTATATGATCTTCTTAATGACAGAAGGAAACTTTGCATGAGGGAAGATGGGCGACAGCAAGTTTGTATTGTAGGACTACAAGAATTTGAAGTTTTTGACGTTCAAATTGTCAAAGAATTCATTGAAAAGGGAAGTGCTTCAAGAAGTACAGGATCTACGGGTGCTAACGAGGAGTCCTCCAGATCGCATGCTATCTTACAATTGGTTGTAAAGAAGCACAATGAGGTGAAAGAGGGCAAGCGAAACACTGATGGAAATGAGGCAAGAAATGGGAAGGTTGTGGGGAAGATTTCTTTCATTGATCTTGCTGGAAGCGAAAGAGGTGCTGACACTACCGATAATGATCGTCAAACACGGATTGAAGGAGCTGAAATCAATAAGAGCCTTTTGGCTTTGAAGGAATGCATTCGCGCTTTAGACAATGACCAGATCCACATTCCATTTCGGGGAAGCAAACTTACAGAAGTGCTGCGGGACTCCTTTGTAGGCAACTCAAAAACTGTTATGATCTCTTGTATATCTCCAGGTGCCGGGTCTTGTGAACACACGCTTAACACCCTGAGATACGCTGATCGGGTTAAAAGTCTTTCCAAAAGTGGAAATCCTAGAAAAGACCCGATCCCTAATTGTGTACCACAAACTAATAAAGACGTTTCATCTACATCAACCCTTCCAGCTAGTGCTGGTGCAGAGGATTTTAGTGATCAACGCCAAGAGAAACCAATGGATATGGGCAAGAAGCCATTTGAAAAGGAGAATACTATGTATAGCTCTGCTGCTTTTGCTGACACAAAGTTACCTAGTATTTCTTCAAATTACCTATCAAATGGTAGAGAAGATAAAGGATTGACTTATGCTTCAATGGAGAGGGAGAGGTTTGAAATGAAAAACTCTTATAATGATTCTTCCAGTCAAAAGATGAACTCTTATTCACAAAATGATACAGATGAGAAAGTGCAAAAGGTGTCTCCCCCACGCAGAAAAGGTTCTAAGGATGAAAAGTCAGAAAGGCCATCAAACTTGATGAAAAGGGATACCAATGGTTCTGATCTCTTAACTGCAAGCTCCAAGCAACAGACCACAGGAAATCACAACACTGTTACCACTGGATCCAGGCTTTATGAAGCAGAATCCGTTCCTGATGGGAATATCAATGCAGTAATTGAGGAGGAAGAAGCACTAATTGCTGCTCATAGGAAAGAAATTGAGGATACGATGGAGATTGTTCGTGAAGAAATGAAACTCTTGGCCGAAGTGGACCAACCAGGAAGCCGTATTGACAATTATGTAGCCCAATTGAGCTTTGTGCTTTCTCGCAAAGCAGCTAGTCTTGTGGGTCTCCAAGCTCGCCTTGCAAGATTCCAACATCGACTAAAAGAACAGGAAATTCTAAGTAGAAAGAGAGTTCCCCGTTCATAA 2427 0.4252 MPPQGNAGAAAAIYDQAAGGSLQSSSTDAGDAVMARWLQSAGLQHLGSPLASSGIDHRLLPNLLMQGYGAQSAEEKQRLLKLMRNLNFNGESGSEHYTPNAQTLGGVAASDGFYSSEFRGDFGAGLLDLHAMDDTELLSEHMISEPFEPSPMPGDTRVFGDDFYPINSKLEKEADVDASINLPMNEKENSTRENNVAKIKVVVRKRPLNKKELAKKEDDVVTVTDNAYLTVHEPKLKVDLTAYVDKHEFCFDAVLDEHVTNDEVYRATVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAADDLVRQLHQPIYRSQKYKLWLSYFEIYGGKLYDLLNDRRKLCMREDGRQQVCIVGLQEFEVFDVQIVKEFIEKGSASRSTGSTGANEESSRSHAILQLVVKKHNEVKEGKRNTDGNEARNGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRVKSLSKSGNPRKDPIPNCVPQTNKDVSSTSTLPASAGAEDFSDQRQEKPMDMGKKPFEKENTMYSSAAFADTKLPSISSNYLSNGREDKGLTYASMERERFEMKNSYNDSSSQKMNSYSQNDTDEKVQKVSPPRRKGSKDEKSERPSNLMKRDTNGSDLLTASSKQQTTGNHNTVTTGSRLYEAESVPDGNINAVIEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSRIDNYVAQLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPRS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01718 808 CDD KISc_KIF2_like 198 530 - -
Trre3g01718 808 PANTHER KINESIN-RELATED PROTEIN 6 27 805 IPR027640 GO:0003777|GO:0007018
Trre3g01718 808 PRINTS Kinesin heavy chain signature 432 450 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 PRINTS Kinesin heavy chain signature 279 300 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 PRINTS Kinesin heavy chain signature 389 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 PRINTS Kinesin heavy chain signature 482 503 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 MobiDBLite consensus disorder prediction 532 585 - -
Trre3g01718 808 Gene3D Kinesin motor domain 174 535 IPR036961 -
Trre3g01718 808 MobiDBLite consensus disorder prediction 634 654 - -
Trre3g01718 808 ProSiteProfiles Kinesin motor domain profile. 198 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 Pfam Kinesin motor domain 204 531 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 ProSitePatterns Kinesin motor domain signature. 431 442 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre3g01718 808 MobiDBLite consensus disorder prediction 548 565 - -
Trre3g01718 808 MobiDBLite consensus disorder prediction 680 705 - -
Trre3g01718 808 Coils Coil 780 800 - -
Trre3g01718 808 MobiDBLite consensus disorder prediction 655 679 - -
Trre3g01718 808 MobiDBLite consensus disorder prediction 633 705 - -
Trre3g01718 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 532 IPR027417 -
Trre3g01718 808 SMART kinesin_4 196 538 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre3g01718 808 FunFam Kinesin-like protein 177 535 - -
Trre3g01718 808 MobiDBLite consensus disorder prediction 569 585 - -
Trre3g01718 808 Coils Coil 724 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01718 Trre-Chr3 13968702 13975857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01718 190 532 Calmodulin-binding Proteins AT5G65930 33.427 1.83e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01718 K10393 - gmx:100778915 1250.73