Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01716 ATGAATTTTTCAATCGGAGGCGTTCGCGGGTCCCGTGATGATGACATTAATAACAATGAAAGAAGTTCTTCTTACAATCGGCTTACGTTGGCTCAAACAACCAAACTTGAAAATTTCATGAAAGAATGCGACCATCCAAATAAGGCCCAACGACAACAATTGGTTGAGGAGCTTGGGCTTCGGGACAAACAAGTCAAATTTTGGTTCCAGAATAAGAGAACACTATTGAAGAAGCAACACGAGAAAAAAGACAATAAGAATCTTCGTTTGGAAAACGAAAGACTTCATAATGAAAACCTTACAATGAAAGAGGCATTGAAGGTTATAAGGTGTGAATCTTGTGGTGGTCCCCCATTTCCGGTTGAAGAGCATGAACATTTCATGCACAAGATGCAACGAGAAAACGCTGAGCTTAAACAAAAGATTGAGAAAACTTCCAAACTTCTTACAAGTTTCAAGGAGGGATAA 468 0.391 MNFSIGGVRGSRDDDINNNERSSSYNRLTLAQTTKLENFMKECDHPNKAQRQQLVEELGLRDKQVKFWFQNKRTLLKKQHEKKDNKNLRLENERLHNENLTMKEALKVIRCESCGGPPFPVEEHEHFMHKMQRENAELKQKIEKTSKLLTSFKEG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01716 155 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Trre3g01716 155 MobiDBLite consensus disorder prediction 1 26 - -
Trre3g01716 155 SMART HOX_1 21 83 IPR001356 GO:0003677
Trre3g01716 155 Coils Coil 73 105 - -
Trre3g01716 155 Pfam Homeodomain 26 78 IPR001356 GO:0003677
Trre3g01716 155 SUPERFAMILY Homeodomain-like 15 83 IPR009057 -
Trre3g01716 155 Gene3D - 9 96 - -
Trre3g01716 155 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 151 IPR042160 -
Trre3g01716 155 Coils Coil 121 148 - -
Trre3g01716 155 CDD homeodomain 27 80 IPR001356 GO:0003677
Trre3g01716 155 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01716 Trre-Chr3 13936483 13938755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01716 25 152 Homeobox Transcription Factor Family AT1G73360 46.512 4.66e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g01716 Homeodomain 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01716 K09338 - gmx:100795075 171.4