Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01709 ATGACCCAACAATGCCCAGAGCGTCTAAGGGTTTTCGTGGTTGGTCATGACACTGCTTTCCTTGATCCCATTGAGAAGGAATGTAATCAACGTAATTATGAAGTTGCCATATTCCATGCAATTTCTTTTCCGTGGAATATTTTGAAGAAAGCCAATGATTGTGTTGATATAATCATAATCGATGCTCAAATGCAAGATCCAAATTCCTATGGTTTTGTCGAATATGTTAAGCAACTAAACGAATTTCCTCTCTGCATGATGTCTGATGATGTATCAGAGGATGCAATGTCTATGGCTTTTGAAAATGGAGCTGATGCCATTTGGGGTAAACCTTTCGGTGAGAAACATATTGATAAAATGCGGTCTGAAATTCTAAAGAAGAAAGCAGAAATAAAAAAAATTACCTCAAACGTAAAAGAAGTTCATAAGAAGAAAAGGGGGAGAGATAATATCAAAAATGGTTGTGTTGAGTACAATAATGATAATTATCAACAGAAGACAAAATTCGAATGGACAACAGAACGACGAGAACAATTTGAAAAAGCTGTGAATCAACTTGGCCTTGATAAGGCAAAGCCAAAAAAGATTTGGGAACTAATGAATGTTCCTGGTTTGACACTAGCAATACTGTCTAGTTACTTACAGAGATATAAAATAAAAAAGTCAAAATTGAATGAAGGGCGTGAAGTTGATGATTCAATATCAGAAGACGGTAATGATATTCAAGATACCACCACTTGTGTCAAAAAAAATCAAGATACCAACACTACTGGAGTTTCTCTTGATGTTGCCCCCCAACCCATATTGTTTTTAGATTTATCAAAATCAGCAGAACCACAACTGGGACTTTTTGCCCAGCCAATACCAGAAGATCACCTTAATGTTACATTGGATTCAGTTAATCAATGTGATAACAATCCTAAAGACACTGTTGTTAGAGTTTCTAATGCGCCCTTAGAGTATCCAAATTTATTACCATCATCATCACAATCATTAGAAGCTGTCCACTCAAACCAAGAACAGGACCTTAATGTTCAACAATGTGACAACAATGTTTATGCAAAACATAATGATGATCAAGACACCAACACCGTTGGCAGAGTTTCTTATGATGATCTGCTTCTCAGTTTATCTGTAACACCATCACCACAGAACAGTGACTTTCTCTTGAGTTACATAGCTGAACTGATGTCGAATCAACAAGATGATCCACAAGAAAACAATGAATTATTGATGGCTGTCGTACGCGGTCAAAAATAA 1260 0.3627 MTQQCPERLRVFVVGHDTAFLDPIEKECNQRNYEVAIFHAISFPWNILKKANDCVDIIIIDAQMQDPNSYGFVEYVKQLNEFPLCMMSDDVSEDAMSMAFENGADAIWGKPFGEKHIDKMRSEILKKKAEIKKITSNVKEVHKKKRGRDNIKNGCVEYNNDNYQQKTKFEWTTERREQFEKAVNQLGLDKAKPKKIWELMNVPGLTLAILSSYLQRYKIKKSKLNEGREVDDSISEDGNDIQDTTTCVKKNQDTNTTGVSLDVAPQPILFLDLSKSAEPQLGLFAQPIPEDHLNVTLDSVNQCDNNPKDTVVRVSNAPLEYPNLLPSSSQSLEAVHSNQEQDLNVQQCDNNVYAKHNDDQDTNTVGRVSYDDLLLSLSVTPSPQNSDFLLSYIAELMSNQQDDPQENNELLMAVVRGQK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01709 419 Gene3D - 163 225 - -
Trre3g01709 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 166 220 IPR006447 GO:0003677
Trre3g01709 419 Coils Coil 117 137 - -
Trre3g01709 419 SUPERFAMILY CheY-like 7 133 IPR011006 -
Trre3g01709 419 Pfam Response regulator receiver domain 11 119 IPR001789 GO:0000160
Trre3g01709 419 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Trre3g01709 419 SMART REC_2 9 121 IPR001789 GO:0000160
Trre3g01709 419 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 310 IPR045279 GO:0009736
Trre3g01709 419 SUPERFAMILY Homeodomain-like 164 223 IPR009057 -
Trre3g01709 419 Gene3D - 8 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01709 Trre-Chr3 13866257 13871793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01709 46 225 Response Regulator Gene Family AT3G16857 25.561 1.09e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre3g01709 Response_reg 3.9e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01709 - K14491 tpra:123913552 142.51