Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01693 ATGCTTGGAGAGGCTTTGTATCCGCTAGTAGATCAGCTGGACCATGATTCTGCAGCTAAGGTTACCAGTATGCTTTTAGAGATGGACCAGCCTGAAGTATTGCATCTTATTGAGTCACCAGATGCTCTCAAGGCTAAAGTTGTTGAAGCCATGGATGTGCTGAGAAATGTTGCTCAACAGCAAGGCAGCAGCCCGGCAGATCAGCTAGCTTCACTCTTTCTCAAGGACATTCTTATTTCTTATATTCAGGCAACATGA 258 0.4496 MLGEALYPLVDQLDHDSAAKVTSMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRNVAQQQGSSPADQLASLFLKDILISYIQAT 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01693 85 SMART poly_2 1 57 IPR002004 GO:0003723
Trre3g01693 85 Gene3D - 1 61 - -
Trre3g01693 85 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 59 IPR002004 GO:0003723
Trre3g01693 85 SUPERFAMILY PABC (PABP) domain 1 72 IPR036053 GO:0003723
Trre3g01693 85 Pfam Poly-adenylate binding protein, unique domain 1 54 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01693 Trre-Chr3 13681215 13681472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01693 1 79 Eukaryotic Initiation Factors Gene Family AT1G49760 74.684 2.60e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01693 K13126 - gmx:100811385 132.109