Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01686 ATGGAGAAAAACGATGACCCAATACCCAAATTCAAATTCAACAAAGAAGATTTAAACCCACCCAATGATTCCGATGCTAAAAGTTTCAATCTTGACGGCAAAATCATGCTCTGTGCAATTGTTCTTCTTTTCTTCATCATCATTCTAATGCTTTGTCTTCATATTTATGCTCGTTGGTATCTTATTCAATCTCGCCGCCGTCGTAACCGTCACCGCCGTCGTACTCAGCTAGTTTTCTTCACCGATAATCCAACAACAACAACCACCGTTGTTACTTCACGTGGTCTTGAAGCTTCTGTTATCGCTTCGCTTCCGTTATTTTTTTACGATCCGAAAACCCAACCGGAAAACCCGTCGGAATGTGCTGTGTGTTTATCGGAATTTGAATCCGGTGAAACGGGTCGGGTTTTACCCAAATGTAAACATAGTTTTCATACTGAGTGTATTGATATGTGGTTTCATTCTCATTCCACGTGTCCACTTTGTCGTGCACCGGTTGAACCCGTATCCGAATTTGAAACCCGACCCGAATTTGTTATAACTGTTTGTGAAGCGGAAACCGGTTCGAGTTCGAATTCCGGTTCGGGTTTGGAAAGTGAGAATTTGAACCGAACCGGTAAAGAGGTTTGTTCGAGTTCGGTTGGGTTAAGGAGAAAACCGTCTTTTTCGGGAGTGACAATTGAGGTACCTTCGAGGAACGAGTTGTGTTGTGACTCGCCGTCGTCGACTCAGTCGTCGTTTCGTTCACCGATGAGTCGAATGTTGTCGTTTAAGAGGATTCTTAGTATGGATTGGAAAGGGAGTGTTTCTCCGTCGTCGTGCGGTGGTATTGGTGGTGGTAGTTGTAGCTCGGTGGCTGAGTTAAAAGTAGAACAAGGTGGACGAGTTGAGACTCAGTGA 900 0.4433 MEKNDDPIPKFKFNKEDLNPPNDSDAKSFNLDGKIMLCAIVLLFFIIILMLCLHIYARWYLIQSRRRRNRHRRRTQLVFFTDNPTTTTTVVTSRGLEASVIASLPLFFYDPKTQPENPSECAVCLSEFESGETGRVLPKCKHSFHTECIDMWFHSHSTCPLCRAPVEPVSEFETRPEFVITVCEAETGSSSNSGSGLESENLNRTGKEVCSSSVGLRRKPSFSGVTIEVPSRNELCCDSPSSTQSSFRSPMSRMLSFKRILSMDWKGSVSPSSCGGIGGGSCSSVAELKVEQGGRVETQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01686 299 FunFam RING-H2 finger protein ATL3 87 168 - -
Trre3g01686 299 CDD RING-H2_EL5-like 120 163 - -
Trre3g01686 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 176 - -
Trre3g01686 299 Pfam Ring finger domain 120 163 IPR001841 -
Trre3g01686 299 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Trre3g01686 299 SUPERFAMILY RING/U-box 104 169 - -
Trre3g01686 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 171 IPR013083 -
Trre3g01686 299 SMART ring_2 121 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01686 Trre-Chr3 13586309 13587208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01686 1 294 Rapid Response to Elicitors AT3G16720 47.500 1.17e-68 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01686 - - lja:Lj6g3v1468220.1 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01686 3 13586309 13587208 Trre3g01686 3 13586309 13587208 ECH
Trre15g04861 15 58796046 58796882 Trre3g01686 3 13586309 13587208 PCT