Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01678 ATGTCGAAATTCTTTGCTCAGGCTGGTGGTACTTCTGATGATGATGATAGTGAGTATGATGACTCGGTTGATGATGTACCGATTGAACCTGACACCGATCCTTCGAAAAGTAAGTACATGGTTGATAATGCTAGTGACAGCGATGAAGACGATGGTCACAAGCGTGTTGTTAGGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTTAACGGTTGACCAGATGAAGAATGCAATGAAGATTAATGATTGGGTGAGTTTGCAAGAGAGTTTTGACAAGATCAATAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTCCCTAAGCTTTATATTAAGGCTCTTGTTTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCGAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCGTTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGAGCTGATTACTAAATCCAGGGAGAGTCCTGAGAGCGAGGAGGAAAAGGATGACGATGAGGAGAGCGAGGAAGATGATGACAGTGATGGTGAGATTATTGAGCCTGACCAGCTTCGTAAGCAGGAACCTAAATCGGATTCGGAAGCTGAATACGAAGAGGGAAGGGATGATGCTGGTGATGGACCTTGGGACCAAAAGCTTAGCAAAAGAGAAAGACTTTTGGACAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTGGCAGCTAGGGGAAAGAAGGGAACTGGAAGGTTTGAACAGGTTGAACAACTTACCTTCTTAACTAAAGTGGCTAAAACACCAGCACAGAAGCTTGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTCAGTGGCCATATGCCCATAACCGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATTAAGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGCTGATTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGTGAGTACGTCCAGAGGCTCAGAGATGAGCCTATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGCGGAGATTTCAAATCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCGGATCTGACAGAAGATGGAGATAATGAAGGCGAGGCTACCGAGGAGTCCAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACACCAGAGCTTGTTTCTCGGAAACCCACCTTCCCGGAGAATAGCAGGGCCCTAATGGATGTGTTAGTTTCACATATATACAAATATGGTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGATGAGTTCTCAATATCTCGTGATCTGCTGCTTATGAGTCATTTGCAAGACAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTCTTTGTGCTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGCCGTTATCACGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAACTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAACATGGCTGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACATTGACTGGTCCTCCTGAGAGTGTCAGAGACCACATTATGGCTGCCACTAGGGCTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTACCTCTCTTGATGTATGGAAATTTGTTAAAAATCGAGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAGGCACTTAGGACATATCTCCTTACCTTCTCTTCATCCTACGAGTCTCTGAGTCTGGATCAAGTCACGAAATTTTTCGACCTATCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCAAGTTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTCCAATTGACAGAGAAATTATCTATTCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTTCCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGCTGCTGGCGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATAATCAGACACGGCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCTAGGAGCGGCTATTCAAGAGATCGTGTGGGGCGTGCTGGTTATCAGAATTCAGGGAGGACTAATCAAGGGGGTTCAGGACTGAGGGGAGCCCAGGGAGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGAGCTTAA 2796 0.4413 MSKFFAQAGGTSDDDDSEYDDSVDDVPIEPDTDPSKSKYMVDNASDSDEDDGHKRVVRSAKDKRFEEMALTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPKLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKSRESPESEEEKDDDEESEEDDDSDGEIIEPDQLRKQEPKSDSEAEYEEGRDDAGDGPWDQKLSKRERLLDRQLMKDPREVTWDIVNKKFKEIVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLADLTEDGDNEGEATEESKGFEDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRALIKGDFNKAFEVITSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPPRRRDGQDYAAAAAGGGGGTGPSGGRWQDLSYNQTRQGSGRAGYGNAGGRPLAYGQAARSGYSRDRVGRAGYQNSGRTNQGGSGLRGAQGDVSTRMVSLKGVRA 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01678 931 MobiDBLite consensus disorder prediction 134 153 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 29 60 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 154 173 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 174 193 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 819 876 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 132 229 - -
Trre3g01678 931 Pfam PCI domain 659 787 IPR000717 -
Trre3g01678 931 Coils Coil 143 170 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 899 914 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 894 919 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 194 229 - -
Trre3g01678 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre3g01678 931 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Trre3g01678 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre3g01678 931 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Trre3g01678 931 MobiDBLite consensus disorder prediction 13 28 - -
Trre3g01678 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 926 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre3g01678 931 MobiDBLite consensus disorder prediction 1 60 - -
Trre3g01678 931 MobiDBLite consensus disorder prediction 853 868 - -
Trre3g01678 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01678 Trre-Chr3 13473912 13478071 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01678 2 931 Eukaryotic Initiation Factors Gene Family AT3G56150 68.630 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01678 K03252 - gmx:100781967 1454.88