Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre3g01668 | ATGTGTGGAGGTGCTATCATTTCTGATTTCATTGGTGTCAAGCGTGACCGTGACCTATGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTTGGTGCTGCTTCTAACACCCCCAATTTCAAAGACTTACCACCCCTTAATTTTGAGAAATTCTTCTCTTCAGACAAAAAAGTGGTAGCATGTGACAATGTTGAGAAGAAACAAAGTGCGGTAACAACTGTAGAGAAGGGTAAGAAGAGCACTGGAGGAAAAAGAGTCCGTAAGAATGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCTGCTGAAATAAGGGACCCACAACAAGGTGTTCGTGTTTGGCTCGGTACTTTCCCGACCGCTGAAGAAGCCGCCAGAGCCTATGATGCTGCCGCCAAGCGCATCCGTGGTGACAAGGCAAAACTCAATTTCCCCGACACTCCTGCTATGTGTCCCGCCACTGCTGATGTTGCTGATGTTGCTGATGTCACTGCTCCTCCAATGAAGAAGCAGTGTCTTAGCCCTGATCAAGCTAGCTCCCACGCTAGCTCGGAGTCTGCTGGGTCATCTATTGGGTCTGAGCTTGATGAGGAAATGGAAATCAAAAAGAAAATGTCTGACCTCGAATGGATCCTCGGCTTGGATAATGATCTTCTTCATGTTCAAGCCCAGACCCAGGTTGAGGCCCAGCCTGACCTCGACCCCATGGGCTTTACCTTGCCTTCTGATTGGGACAACAGCTTCCTGGACATGTGGACTACTGAAGACATGGTTGATCCCATCTCTCAAATGATTTATAACTAA | 813 | 0.4822 | MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGAASNTPNFKDLPPLNFEKFFSSDKKVVACDNVEKKQSAVTTVEKGKKSTGGKRVRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDTPAMCPATADVADVADVTAPPMKKQCLSPDQASSHASSESAGSSIGSELDEEMEIKKKMSDLEWILGLDNDLLHVQAQTQVEAQPDLDPMGFTLPSDWDNSFLDMWTTEDMVDPISQMIYN | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre3g01668 | 270 | Gene3D | AP2/ERF domain | 91 | 149 | IPR036955 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | SUPERFAMILY | DNA-binding domain | 91 | 149 | IPR016177 | GO:0003677 | |
Trre3g01668 | 270 | MobiDBLite | consensus disorder prediction | 171 | 198 | - | - | |
Trre3g01668 | 270 | Pfam | AP2 domain | 91 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | CDD | AP2 | 92 | 150 | IPR001471 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | ProSiteProfiles | AP2/ERF domain profile. | 91 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | PANTHER | DNA-BINDING DOMAIN | 68 | 192 | IPR044808 | GO:0003700|GO:0009873 | |
Trre3g01668 | 270 | SMART | rav1_2 | 91 | 154 | IPR001471 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | PRINTS | Ethylene responsive element binding protein signature | 114 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | PRINTS | Ethylene responsive element binding protein signature | 92 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Trre3g01668 | 270 | MobiDBLite | consensus disorder prediction | 176 | 194 | - | - | |
Trre3g01668 | 270 | FunFam | Ethylene-responsive transcription factor 2 | 90 | 149 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre3g01668 | Trre-Chr3 | 13359501 | 13361840 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre3g01668 | 1 | 261 | AP2-EREBP Transcription Factor Family | AT3G16770 | 39.711 | 4.28e-43 | 145 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre3g01668 | AP2 | 1.1e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre3g01668 | K09286 | - | gmx:100817253 | 209.149 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre3g01668 | 3 | 13359501 | 13361840 | Trre3g01668 | 3 | 13359501 | 13361840 | ECH |