Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01668 ATGTGTGGAGGTGCTATCATTTCTGATTTCATTGGTGTCAAGCGTGACCGTGACCTATGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTTGGTGCTGCTTCTAACACCCCCAATTTCAAAGACTTACCACCCCTTAATTTTGAGAAATTCTTCTCTTCAGACAAAAAAGTGGTAGCATGTGACAATGTTGAGAAGAAACAAAGTGCGGTAACAACTGTAGAGAAGGGTAAGAAGAGCACTGGAGGAAAAAGAGTCCGTAAGAATGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCTGCTGAAATAAGGGACCCACAACAAGGTGTTCGTGTTTGGCTCGGTACTTTCCCGACCGCTGAAGAAGCCGCCAGAGCCTATGATGCTGCCGCCAAGCGCATCCGTGGTGACAAGGCAAAACTCAATTTCCCCGACACTCCTGCTATGTGTCCCGCCACTGCTGATGTTGCTGATGTTGCTGATGTCACTGCTCCTCCAATGAAGAAGCAGTGTCTTAGCCCTGATCAAGCTAGCTCCCACGCTAGCTCGGAGTCTGCTGGGTCATCTATTGGGTCTGAGCTTGATGAGGAAATGGAAATCAAAAAGAAAATGTCTGACCTCGAATGGATCCTCGGCTTGGATAATGATCTTCTTCATGTTCAAGCCCAGACCCAGGTTGAGGCCCAGCCTGACCTCGACCCCATGGGCTTTACCTTGCCTTCTGATTGGGACAACAGCTTCCTGGACATGTGGACTACTGAAGACATGGTTGATCCCATCTCTCAAATGATTTATAACTAA 813 0.4822 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGAASNTPNFKDLPPLNFEKFFSSDKKVVACDNVEKKQSAVTTVEKGKKSTGGKRVRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDTPAMCPATADVADVADVTAPPMKKQCLSPDQASSHASSESAGSSIGSELDEEMEIKKKMSDLEWILGLDNDLLHVQAQTQVEAQPDLDPMGFTLPSDWDNSFLDMWTTEDMVDPISQMIYN 270
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01668 270 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Trre3g01668 270 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Trre3g01668 270 MobiDBLite consensus disorder prediction 171 198 - -
Trre3g01668 270 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Trre3g01668 270 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Trre3g01668 270 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Trre3g01668 270 PANTHER DNA-BINDING DOMAIN 68 192 IPR044808 GO:0003700|GO:0009873
Trre3g01668 270 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Trre3g01668 270 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Trre3g01668 270 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Trre3g01668 270 MobiDBLite consensus disorder prediction 176 194 - -
Trre3g01668 270 FunFam Ethylene-responsive transcription factor 2 90 149 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre3g01668 Trre-Chr3 13359501 13361840 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01668 1 261 AP2-EREBP Transcription Factor Family AT3G16770 39.711 4.28e-43 145
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g01668 AP2 1.1e-15 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01668 K09286 - gmx:100817253 209.149
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01668 3 13359501 13361840 Trre3g01668 3 13359501 13361840 ECH