Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01666 ATGGCTCCTTTTCCATCTCTTGTCAATGTAATTACAAGAACAATATCATTGAAGAAAGACAAGAGTAATGGAAAATATGATGATGATGATGATGATGATGCAAGAAAAGTTGTGGAAGCAATGGCAAAGGAAGCAAGAAAGAATGAAATGTTAATAAGCTCGTCTGGAATTGTTAAGTCTGACAAGTCTAACAATTTTTCATGTTTGTTCACTAAGAAGGGTCAAAAAGGATTAAATCAAGATCGCCTTATTGTTTGGGAGGAATTTGGATGCCAAGAAGACATTATTTTCTGTGGAGTTTTTGATGGACATGGCCCTTGGGGACACTTTGTAGCTAAAAGAGTCAGAAAAATGTTACCTACTTTTTTGCTCTACAATTGGCAGGAAGATCTAGCACAAAAATCACTTGACATGGATTTTAAAATGGAAACAGACCATAAGTATGATATATGGAAGCAGTCCTATATAAAGACTTTTGCTGCAATTGATCAGGACTTAAAGCAACATACTGGAATTGATTCATTTCAAAGTGGAACTACAGCTTTGACCCTTATCAAACAGGGTGAATATCTCAGTATAGCAAATGTTGGTGATTCTAGAGCTGTCTTAGCAACCACTTCAGACAATGGCACATTGACTCCTATTCAGCTTACCACTGACTTGAAGCCAAACTTACCAAAGGAAGCGGAGCGCATAATGGAGTCAAAAGGGAGAGTATTTTGTTTGGAAGATGAGCCAGGAGTGTATAGGGTATGGATGCCAAATGGTAAGACACCAGGACTAGCAATATCAAGAGCATTTGGTGATTATTGTGTAAAAGATTTTGGACTAATCTCTGTGCCTGATGTCACTCAAAGAAAACTTACCACTACGGATCAATTTGTCATCTTGGCAACTGATGGGGTATGGGATGTTATTTCAAACCAAGCAGCTATCAAAATTGTTGCTTCAACTCCAAATAGAGAAAAAGCAGCTCAAAGGCTAGTGAAATGTGCTACACATGAATGGAAACGTAAGAGAAAAGGCATTGCAATTGATGATATATCAGCTATTTGTCTCTTCTTTCACTCTCCTCCTTCACATGCAACAACTAAAATTGTTGAATGA 1107 0.3749 MAPFPSLVNVITRTISLKKDKSNGKYDDDDDDDARKVVEAMAKEARKNEMLISSSGIVKSDKSNNFSCLFTKKGQKGLNQDRLIVWEEFGCQEDIIFCGVFDGHGPWGHFVAKRVRKMLPTFLLYNWQEDLAQKSLDMDFKMETDHKYDIWKQSYIKTFAAIDQDLKQHTGIDSFQSGTTALTLIKQGEYLSIANVGDSRAVLATTSDNGTLTPIQLTTDLKPNLPKEAERIMESKGRVFCLEDEPGVYRVWMPNGKTPGLAISRAFGDYCVKDFGLISVPDVTQRKLTTTDQFVILATDGVWDVISNQAAIKIVASTPNREKAAQRLVKCATHEWKRKRKGIAIDDISAICLFFHSPPSHATTKIVE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01666 368 FunFam Probable protein phosphatase 2C 34 57 357 - -
Trre3g01666 368 CDD PP2Cc 65 355 IPR001932 -
Trre3g01666 368 Gene3D - 21 357 IPR036457 -
Trre3g01666 368 SMART PP2C_4 57 353 IPR001932 -
Trre3g01666 368 SUPERFAMILY PP2C-like 65 358 IPR036457 -
Trre3g01666 368 Pfam Protein phosphatase 2C 88 332 IPR001932 -
Trre3g01666 368 ProSiteProfiles PPM-type phosphatase domain profile. 66 355 IPR001932 -
Trre3g01666 368 PANTHER PROTEIN PHOSPHATASE 56 353 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01666 Trre-Chr3 13324634 13327905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01666 1 356 PP2C-type Phosphatase Gene Family AT3G05640 57.703 9.47e-159 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01666 - - gmx:100817397 565.844