Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01639 ATGAAACTCACCAACAACAAAATTTCCATGCCAACACCAACTTCACCATTAAACTCCGGCAACAACCTCATCTCCGACCAGTTTCCGGCGGGTCTTCGTGTACTTGTTGTTGATGATGACCCAACATGTCTCATGATCCTTGAAAGGATGCTTCGTTTTTGTCTCTACGAAGTTACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTCAGAGAGAACAAAAATGGGTTTGACATTGTTTTAAGTGATGTGCATATGCCTGATATGGATGGATTCAAACTTTTAGAACATATTGGATTGGAAATGGATCTTCCTGTCATTATGATGTCGGCCGATGATGGAAAAAATGTGGTAATGAAAGGTGTGACACACGGTGCTTGTGATTATCTAATCAAACCGGTGAGAATTGAAGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAAATAATAAGTGGAAGGATCTGAATCAATCTAGTGGATTAGATGAAAGAGATCGAGAAAAAAAGGTGTCTAGCGATGTTGATTACTCATCTTCAGCTAATGAAGGCAAGAGCTCGTCAAAGAAGAGGAGGGAAGAGGAAGATGAGGCGGATGAGAGGGATGATTCTTCCACGTCGAAGAAGCCGCGAGTTGTTTGGTCTATTGAGCTCCACCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTTCGACGGTTGAGTGGAGTTTCCCAACAGCAGAGTAACTTGAACAACTTCATGAATCCACAAGAGTTAATATTTGGTGCGACGCCAATAAATGGAATTGATCTTCAAACTCTTTCAACTGCTGGCCACCTCTCACCTCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTTCAGTTCTGAGAACTCAAAACTAAGATTTGGAGAAGGACAAGTGCAACATATGAGCAGCATTAAACCGACGAGCTTTCTTCACGGAATCCCTACCAACATGGAGCCAAAACAGTTTGCCAATTTCCATCAATCTGCTCAATCATTTGGTAGCACGAATACGCGAGTCAATGCTTCTTCTGCAAAGAGAAGCCCCTGGTTGATGCAGATGGCTCAGGCTCAGTCTCAGTCTCAGTCTCAACCAAGAGGTCATATGCTAAATGAGAATATCAATTCTCATACTACAAGGTTTCCATCATCTTCGATGCAACCTACAGGACCAAATGGAATATCGATCAATAGTTTCCCTCTTAGATGCACTCCGAGTTTATCCAGTAGCAGTTCAAAAGGTGTGTTTCATGCAGAAGCTACTTCGGGAATTAAAGAATCAGGTGGATTTAGTTATGATATTTTTAATGAACTCCATCAGAAGTCGAATGATTGGGACATAGCAAATACAAACCTGACATATGATGCTTCTCAACATGCAAATCCTTTACAAGGAAATATTGATGTGTCGCCGCCAATTTTAGGCAATCGTGGTTTTCACTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGTCAAATTAATCTCCAAAATGTTGGTCAACACCTCAATACACCTTTTGTTGACAATTCATTAAGAGTTAAGAGCGAAACAATTCCGGATACAAACTCCGAAATTAACCCTTTCTCTGATCAATTCAGTCAAGAGGATCTCATGAGTGCATTTCTGAATCAGCACGAAGGCATCGGTCCAGTTCAAAATGAGTTTGACTTTGATGGATATTCCATAGACAACATTCCGGTTTATAACAGATCATGTTAG 1839 0.4084 MKLTNNKISMPTPTSPLNSGNNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRNNKWKDLNQSSGLDERDREKKVSSDVDYSSSANEGKSSSKKRREEEDEADERDDSSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNFMNPQELIFGATPINGIDLQTLSTAGHLSPQSLAKLQAAGLFSSENSKLRFGEGQVQHMSSIKPTSFLHGIPTNMEPKQFANFHQSAQSFGSTNTRVNASSAKRSPWLMQMAQAQSQSQSQPRGHMLNENINSHTTRFPSSSMQPTGPNGISINSFPLRCTPSLSSSSSKGVFHAEATSGIKESGGFSYDIFNELHQKSNDWDIANTNLTYDASQHANPLQGNIDVSPPILGNRGFHSIQQTRQNRDGMSQINLQNVGQHLNTPFVDNSLRVKSETIPDTNSEINPFSDQFSQEDLMSAFLNQHEGIGPVQNEFDFDGYSIDNIPVYNRSC 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01639 612 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Trre3g01639 612 FunFam Two-component response regulator 32 169 - -
Trre3g01639 612 PIRSF RR_ARR_type-B 14 599 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre3g01639 612 MobiDBLite consensus disorder prediction 158 211 - -
Trre3g01639 612 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Trre3g01639 612 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 365 IPR045279 GO:0009736
Trre3g01639 612 SUPERFAMILY CheY-like 31 154 IPR011006 -
Trre3g01639 612 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Trre3g01639 612 Gene3D - 207 270 - -
Trre3g01639 612 Gene3D - 32 167 - -
Trre3g01639 612 FunFam Two-component response regulator 207 270 - -
Trre3g01639 612 SMART REC_2 32 144 IPR001789 GO:0000160
Trre3g01639 612 CDD REC_typeB_ARR-like 34 148 - -
Trre3g01639 612 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Trre3g01639 612 MobiDBLite consensus disorder prediction 187 210 - -
Trre3g01639 612 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Trre3g01639 612 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Trre3g01639 612 MobiDBLite consensus disorder prediction 158 176 - -
Trre3g01639 612 MobiDBLite consensus disorder prediction 397 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01639 Trre-Chr3 13125258 13128294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01639 66 607 Response Regulator Gene Family AT3G16857 45.055 1.73e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre3g01639 Response_reg 4.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01639 - K14491 tpra:123885541 1079.7