Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01638 ATGGCCTCAAACTTGTGTAGCTGCTTCTTTATCGTCGCCGTGTTATCAATCCTCTTTGCAACGCGGACAACATCTCAGCCACAAACATCAGATGCATGCAATGGAATATTCGTGTCGTACGCCTACACCGGCGGAACAAGGCTACCGCCAAACATATCAGACGCGGTGGAGCAACCATATCGGTTTGAGTCGACACTGACGGTGCTCAACAACGGACTCGTGGAGCTGAAGTCTTGGAAGGTATTCGTTGGGTTTCGGCATCAAGAGTGGTTGGTATCTGCATCCAATGCAATCCTCGCTGACGGGACGAGCATCCCCGGCGCAGTTGGGAACGGCACCATTTTTGCAGGATCTTCAGTAATTGATTTGAAGACAGCAGCAGCAACTGCAGGCGACTTAACGCAAATGCAGGTTCAGGTAAAGATGGTGGGGACAACATTAGGGGTTGCGCCACCAAGCGTTCCTATGCCTTCTACCATAAACCTTGCCAATGATGGATTCGTATGCAGTGAACCCGCTTCTCACGGGAACAATGAAACTCATGTATGTTGCAAAAGTGATCCTAATTTCAAGACAAAAATCACACCAAATGAAAAATTTCTACCTAGACAAAATGGTGATCTTACCATAATGTATGATGTGATCAAAGCATACAATTCCAATTATTGGTCAGAAGTAACAATTTCAAACCATAACACTCTAGGACGTCTTGACAATTGGAAATTAAGCTGGAATTGGACAAATGATGAATTTATACACACAATGAAAGGTGCTTATCCATCAACTATAGATTCTTCTAACTGTATTTTTGGTTCACAAGGTGAATTTTACAAGGAACTTGATTTTTCCAATGTATTGAATTGTGAAAAAAGACCTACAATAATTGATTTACCTCCAACAAGGTTCAATGATACACAACTTGGTAAAGTACCATATTGTTGTAGGAATGGTACTATATTACCACCATATATGGACCTTAGTAAGTCAATTTCAAGGTTTCAAATAAATGTCTTTAAAATGCCACCAAATATCAATCGGTCAAACCTTATACCGCCACAAAATTGGGAGATTAAAGGTGAACCGATTAACCCTAATTACAAATGTGGCGCACCGATTAGGGTTAGTCCTAGTCAATCTCAAGATCCAACAGGGTTGCCTTCAAACATATCTTCAATTGCAAGTTGGCAAGTTGTGTGCAACATAACTACAAAGTCATTATCAAAAAGTGATTCTCCTAAATGTTGTGTCTCATTTTCAGCTTATTATAATGAATCAGTTATTCCTTGCAATACATGTGCATGTGGATGTCCTAGTAATCAAGAGAAAACATGTAGTGCTAATACACCAGCTATGTGGCTTCCACCAAAAGCACTTCTTGTTCCATTTGAGAATAGAAGTGAAATAGCACATGATTGGGCTAGGTACAAAAAATTACAAGTATCTAACCCTATACCATGTGGTGATAATTGTGGTGTGAGTATAAATTGGCATGTAAACACAGATGATAAAAAAGGTTGGACTGCAAGGATAACAATTTTTAACTGGGGTGAGACGAATTTCGCCGATTGGTTTGCTGCGGTACAAATGGACAAAGGTGCAATAGGTTTTAAGGAAATGTATTCATTCAATGGAAGCTTATTAGAGAGATTAAACACTACAATATTCATGCAAGGTAAGAAAGGATTGAACTTTCTTGTAGCAGAAGCAAATGGGTCGAACCCTCGAAGAGATCCGAGGGTGCCTGGGAAACAACAGTCGGTAATTTTGTTTACGAAGAAAAATAAGGATGAAATCAATGTCGCAGGTGGTGATGGTTTTCCTAGTAAAGTGTTCTTCAATGGAGAGGAATGCTCTCTCCCTTCTGTGTATCCAAGCAATGGTTTGAGGAATGAATTTTCCTCGCTTACTATTACGATCCTAATATTGTTGTCAATCATCTTGATGCAACAATGGTGA 1956 0.3998 MASNLCSCFFIVAVLSILFATRTTSQPQTSDACNGIFVSYAYTGGTRLPPNISDAVEQPYRFESTLTVLNNGLVELKSWKVFVGFRHQEWLVSASNAILADGTSIPGAVGNGTIFAGSSVIDLKTAAATAGDLTQMQVQVKMVGTTLGVAPPSVPMPSTINLANDGFVCSEPASHGNNETHVCCKSDPNFKTKITPNEKFLPRQNGDLTIMYDVIKAYNSNYWSEVTISNHNTLGRLDNWKLSWNWTNDEFIHTMKGAYPSTIDSSNCIFGSQGEFYKELDFSNVLNCEKRPTIIDLPPTRFNDTQLGKVPYCCRNGTILPPYMDLSKSISRFQINVFKMPPNINRSNLIPPQNWEIKGEPINPNYKCGAPIRVSPSQSQDPTGLPSNISSIASWQVVCNITTKSLSKSDSPKCCVSFSAYYNESVIPCNTCACGCPSNQEKTCSANTPAMWLPPKALLVPFENRSEIAHDWARYKKLQVSNPIPCGDNCGVSINWHVNTDDKKGWTARITIFNWGETNFADWFAAVQMDKGAIGFKEMYSFNGSLLERLNTTIFMQGKKGLNFLVAEANGSNPRRDPRVPGKQQSVILFTKKNKDEINVAGGDGFPSKVFFNGEECSLPSVYPSNGLRNEFSSLTITILILLSIILMQQW 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01638 651 Pfam COBRA-like protein 222 402 IPR006918 GO:0010215|GO:0016020
Trre3g01638 651 PANTHER COBRA-LIKE PROTEIN 7 22 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01638 Trre-Chr3 13122728 13125026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01638 33 624 COBRA Gene Family AT4G16120 61.681 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01638 - - vum:124836920 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01638 3 13122728 13125026 Trre3g01638 3 13122728 13125026 ECH
Trre15g04888 15 59001159 59003516 Trre3g01638 3 13122728 13125026 PCT