Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01636 ATGTCGCTCAGACCAAATGCTAGAACCGAGGTTCGTCGTAACCGTTACAAAGTTGCCGTCGATGCCGACGAAGGTCGCCGGAGAAGAGAGGATAACATGGTTGAGATCCGTAAAAATAAGCGTGAAGAGAGTCTCTTGAAGAAAAGACATTTAGGTCTTCAAAATCAACAGCAGTTTTCTACTCCTCTTCAGTCTTCTTCCATTGTTGAGAAAAAGTTGGAGAGTCTTCCTGCAATGGTTGCTGGGGTTTGGTCGGATGATAATACCCAACAATTGGAAGCAACTACGCAATTTCGGAAGCTTCTTTCGATTGAACGCAGCCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTTCCTCGTTTTGTTGAGTTTCTAGTTAGGGAGGATTTTCCTCAACTTCAGTTTGAGGCTGCATGGGCACTCACAAACATAGCATCTGGAACTTCTGACAACACTAAGGTTGTAATTGATCATGGGGCTGTGCCAATATTTGTCAAGCTACTAAGTTCTCCTAGTGATGATGTTCGGGAGCAGGCTGTATGGGCATTGGGAAATGTTGCTGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCGGTCATGGTGCCCTGATCCCGTTGTTATCCCAGTTGAATGAGCAGGCAAAGCTTTCTATGCTGAGAAATGCCACGTGGACCCTGTCAAACTTTTGCAGGGGCAAGCCACAACCTCCATTTGAGCAGGTGAAGCCAGCGCTTCCTGCTCTTCAGCGTTTGGTTTTTTCCGATGATGAAGAAGTCTTGACAGACGCATGCTGGGCACTCTCGTATCTTTCTGATGGAACAAATGACAAAATTCAAGCGGTGATTGATGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTCTGCACCCTTCTCCTTCAGTGCTGATTCCTGCACTTCGCACTGTGGGAAACATTGTAACTGGAGATGATAATCAGACTCAGGCCATTATCAACCATGGGTCACTCCCTTGTCTTTTGAGCTTGTTGACCCATAATCATAAGAAAAGCATTAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAGAGAGCAGATACAGGCTGTTATTGAAGCTGGTTTGATTGCTCCTATAATCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCACTCTCTAATGCTACATCTGGTGGTACCCATGAGCAAATCAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATTTGCTTATTTGCCCTGATCCAAGAATTGTCACAGTCTGTTTAGAAGGTCTTGAGAATATACTAAAGGTTGGAGAAGTGGAGAAAAGCCTTGGTAACACGGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACTTGCAGAGTCATGACAACAATGAGATTTATGAAAAGGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGATGAAGATGAGACACTGCCTTCAGGCGATGGTTCTCAACCTGGTTTTAATTTTGGAAGCAATGACCTTTCGGTTCCATCTGGTGGATTCAACTTCAGTTGA 1596 0.4436 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRHLGLQNQQQFSTPLQSSSIVEKKLESLPAMVAGVWSDDNTQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLSQLNEQAKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALQRLVFSDDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDNQTQAIINHGSLPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPIINLLQNAEFDIKKEAAWALSNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEVEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGSQPGFNFGSNDLSVPSGGFNFS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01636 531 SMART arm_5 275 315 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 190 232 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 234 273 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 360 400 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 149 189 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 106 147 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 403 443 IPR000225 GO:0005515
Trre3g01636 531 SMART arm_5 317 358 IPR000225 GO:0005515
Trre3g01636 531 FunFam Importin subunit alpha 11 50 - -
Trre3g01636 531 SUPERFAMILY ARM repeat 6 502 IPR016024 -
Trre3g01636 531 Gene3D - 74 497 IPR011989 -
Trre3g01636 531 PANTHER IMPORTIN ALPHA 12 500 - -
Trre3g01636 531 PIRSF Importin_alpha 2 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre3g01636 531 Gene3D - 11 51 IPR036975 GO:0006606
Trre3g01636 531 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Trre3g01636 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Trre3g01636 531 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Trre3g01636 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Trre3g01636 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Trre3g01636 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Trre3g01636 531 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Trre3g01636 531 FunFam Importin subunit alpha 74 497 - -
Trre3g01636 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Trre3g01636 531 Pfam Atypical Arm repeat 458 502 IPR032413 -
Trre3g01636 531 MobiDBLite consensus disorder prediction 501 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01636 Trre-Chr3 13063678 13067018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01636 132 395 U-box Gene Family AT3G46510 25.283 1.70e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01636 K15042 - gmx:100808498 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01636 3 13063678 13067018 Trre3g01636 3 13063678 13067018 ECH
Trre3g01636 3 13063678 13067018 Trre13g05010 13 56179601 56183563 ECH
Trre3g01636 3 13063678 13067018 Trre1g04217 1 47598503 47602355 ECH
Trre15g04890 15 59034936 59038152 Trre3g01636 3 13063678 13067018 PCT