Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01630 ATGTCAGAAGGAGCCAGTCTTGTGCTAGAATCGTCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTTAATCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCTTATGAGTTTTATTGCAGTTTTGCTAAACAATTTGGCTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTTACAAGGAGGGATTTTACTTGCCATCGCGGTGGATTTCCCCAAAATAAACCTTCTGAAGATGGGGGAGGGGGAAAGGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGGATAGTGAAAAGGGTAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCACAATCACGAGTTGTTAAAATCCAATGAGGTTCGTTTTCTTCCATCACACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCTTATTTGCTAAAGCTGGAATGTCGGTAAGGCAAATGCTAAGATTAATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTACTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTCAGAAATGTGGATAAAGATAATGATGCTATTGATCTGATTGCAATGTGTAAGAGATTAAAGGATGAAAATCACAGCTTCAAGTATGAATTCAAGATAGATAGTAATAACCGGCTTGAGTGCATCGCATGGTCCTACGGCTCATCAATTCAATCATATGAGGTATTTGGAGATGCTGTGGTTTTTGATACGACGTACCGAGTCGAAGCTTATGACATGCTGTTGGGAATATGGCTTGGAGTGGACAATAACGGAATGCTATGTTGCTTTAGTTGTGCACTTCTACGTGACGAAAATATGCTGTCTTTTTCATGGGCTATAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATACTGACGGATCACAATACGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCCGAAAGTAAACACGCCTTTTGTATATGGCATATTCTCTCCAAGTTCTCTGACTGGTTTTCTATACTTCTTGGATCACAATATGACGAGTGGAAAGCTGAGTTCCACCGGCTCTACAATTTGGAAATGGTAGAAGATTTCGAAGAAGGCTGGAGGCTAATGGTCAATAAATATGGACTCCATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGACGATACTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAATGTTTTCATCCAACGGTTCTTGAGTGCACAATCTCAACCAGAACGCTTTTTAGAGCAAGTCGCTGATATCGTTGATTTTAATGACCGAGCCGGAGCAAAACAAAAGATGCAAAGGAAAATGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATAGAATCCCATGCCGCCACTATACTTACTCCTTATGCCTTAAGTAAACTCCAAGAAGAGCTAGTTTCGGCACCACAATATGCATCCTTTCTGGTTGATGAAGGAGTTTTCCAGGTCAGACACCACTCTCAGACTGATGGAGGTTCCAAAGTGCTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAAACATGTGCTACGAGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCGATCCGATGGCGAAGCATTGGTTCGTCTTCTCTTAACCATTTTCAGGGTACAACTAGCAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCATTGGTTTCAACACTTCTAATGGAATCCGTTGAAACTGATGAAAGCCTTGATGTTGCTTGTGACCAAGTTTCCATGGTGTTATCTCGCATCAAAACTCTTCCTCGGTCATCACATGGGGTAAATGACATTACATTTAATTATGCATCAGATTCATTGATCCTGCCAGAGGTAGAAGATACTGACGAAATGATTCATGGTTTTACGATTGCAAATACTCATGATTCTATGGCTTTAGGCAAGTTAAAGGAGAAAAGGGCAAGAGATGGAGTTGATCTCAGTAGAAAACATAGGCAATTCTCGGCGCCATTATGTGCACAATATGGACATGATGGATCCGATTGCTCAATAATGGCGGATGATAATATAAACGAAGATGCATTAGGGTATATGCAGTAA 2289 0.412 MSEGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPSEDGGGGKAQRNRKSSRCGCQAYMRIVKRVDFDVPEWRVTGFRNIHNHELLKSNEVRFLPSHCPISPDDKSRICLFAKAGMSVRQMLRLMELEKGIKLGCLTFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHSFKYEFKIDSNNRLECIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMLCCFSCALLRDENMLSFSWAIKAFLGFMKGKAPQTILTDHNTWLKEAIAVEMPESKHAFCIWHILSKFSDWFSILLGSQYDEWKAEFHRLYNLEMVEDFEEGWRLMVNKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQTESINVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASFLVDEGVFQVRHHSQTDGGSKVLWLPCQEHISCSCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPIRWRSIGSSSLNHFQGTTSRDQPERIQFLESLVSTLLMESVETDESLDVACDQVSMVLSRIKTLPRSSHGVNDITFNYASDSLILPEVEDTDEMIHGFTIANTHDSMALGKLKEKRARDGVDLSRKHRQFSAPLCAQYGHDGSDCSIMADDNINEDALGYMQ 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01630 762 Pfam FAR1 DNA-binding domain 59 155 IPR004330 -
Trre3g01630 762 Pfam MULE transposase domain 278 370 IPR018289 -
Trre3g01630 762 Pfam SWIM zinc finger 564 587 IPR007527 GO:0008270
Trre3g01630 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 606 IPR031052 GO:0006355
Trre3g01630 762 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g01630 762 SMART 26again6 565 592 IPR006564 GO:0008270
Trre3g01630 762 ProSiteProfiles Zinc finger SWIM-type profile. 542 590 IPR007527 GO:0008270
Trre3g01630 762 MobiDBLite consensus disorder prediction 79 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01630 Trre-Chr3 13034952 13038342 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g01630 FAR1 1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01630 - - gmx:100778434 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01630 3 13034952 13038342 Trre3g01630 3 13034952 13038342 ECH