Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01629 ATGAGTGGTAGTTCATCTAATAACCACATAATAAACAATGAAGAGCAACCTTCCTCTTCTTCCTCATCAACCTTGAAGCTATTTGGTTTCTCATTAACACCATCTAAAACCGTTCCTTATAAAACCAAGAAATTCATATGCCACTTTTGTCGCCGTGAATTTTCCAATTCTCAAGCGTTAGGAGGCCATCAAAATGCTCATAAGAGAGATCGCCAAAGAGCACATTTTCTTTCCATTCTTCCTCATCATCAACGCTTTGTACCATGTTCACCTTATCGTCCTATGATAGCACCACATGGAACACCTAGAGTAGTGTTTTTGCATCCACACCGCCGGTCACCGGAAGCAATATGGAATACACAACATTATGAAGAGGAGCCTAATGAGAATCCTTTCAATGCAACCACATCCACAAATAATGAATCTTTCATGCAAGTACACAATAATATTATTGATGGTGATGTTGATCTTAATTTGACTCTAGCTTGTGCACCTTTAATTTCCAAGGACAAAGAGTTTGAAAGAGAGTGA 531 0.3861 MSGSSSNNHIINNEEQPSSSSSSTLKLFGFSLTPSKTVPYKTKKFICHFCRREFSNSQALGGHQNAHKRDRQRAHFLSILPHHQRFVPCSPYRPMIAPHGTPRVVFLHPHRRSPEAIWNTQHYEEEPNENPFNATTSTNNESFMQVHNNIIDGDVDLNLTLACAPLISKDKEFERE 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01629 176 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Trre3g01629 176 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g01629 176 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Trre3g01629 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Trre3g01629 176 PANTHER ZINC FINGER PROTEIN 5 14 162 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01629 Trre-Chr3 13024861 13025391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01629 19 88 C2H2 Transcription Factor Family AT1G67030 42.045 6.70e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01629 - - tpra:123887517 310.071