Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01627 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTTGGATTGAAAAAAGGAAGATGGACAACTGAAGAAGATAAGATCTTGACTGATTACATCAAACAAAATGGTGAAGGATCTTGGAGATTTTTGCCTAAGAAAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGATTAAGATGGATAAATTATTTGAGAGCAGATGTGAAGAGAGGCAACATAGCCCCTCATGAGGAAGAAATCATTGTCAAGTTACATGCTGTTCTTGGAAATAGGTGGTCTGTGATAGCATCACATTTACCCGGACGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGAGAAGAAAAATTTACTGCTTCATGAGATCCATAAATGAGTCTCCACCACCACTACCACAACTTGACATGGCATCTACTTCCAAAAAATTATTCCAAGGGAAAAAAATTAATCCAAAAATAGAAGAGAAAAATAACATGGCTTTGACTCAAAACTCCCTTGAACCAATTATGCCTAAAGAAGTTGAAGAAATTTCAAAGAATAATGTTTTTTATGAAATGGAGGGTAGTAATAATATAAATAATACAATTTCATCATACCCTAGCAAGATTAATGAATTAGCTATTGATGAAGGTTTGGGACCATATAAATGGCTAGATGATGAAATTATGAAACTTCGTAACATGTTTGAAAATGGTATGAGGAGTTATGTTACACTTCATGAGAATAATGAAAAGGGTACTAATGAATATGACTATAAGAATATTCATGTGGAAATAATGGAAAAAAATAAGGAAATGAAAAGTGACATGATTTGGGGAGAATCATCTAATGGAGAGAGTGATGAGATGTACAATTGTTGTTCATCAATGAATTCTGCCACAGATTATGATCAATTGTCTGATTGGGATTTTTGTGAAGAAGACAAAATGAAGACTTGCTTGTGGGGTACAGGTATTGGTGAAATCATGAATGGTTTTTATTAG 981 0.3394 MGRAPCCEKVGLKKGRWTTEEDKILTDYIKQNGEGSWRFLPKKAGLLRCGKSCRLRWINYLRADVKRGNIAPHEEEIIVKLHAVLGNRWSVIASHLPGRTDNEIKNYWNSHLRRKIYCFMRSINESPPPLPQLDMASTSKKLFQGKKINPKIEEKNNMALTQNSLEPIMPKEVEEISKNNVFYEMEGSNNINNTISSYPSKINELAIDEGLGPYKWLDDEIMKLRNMFENGMRSYVTLHENNEKGTNEYDYKNIHVEIMEKNKEMKSDMIWGESSNGESDEMYNCCSSMNSATDYDQLSDWDFCEEDKMKTCLWGTGIGEIMNGFY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01627 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre3g01627 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre3g01627 326 Pfam Myb-like DNA-binding domain 72 112 IPR001005 -
Trre3g01627 326 CDD SANT 72 112 IPR001005 -
Trre3g01627 326 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 224 - -
Trre3g01627 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre3g01627 326 FunFam Myb transcription factor 11 67 - -
Trre3g01627 326 CDD SANT 16 61 IPR001005 -
Trre3g01627 326 FunFam Myb transcription factor 71 116 - -
Trre3g01627 326 Gene3D - 71 116 - -
Trre3g01627 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre3g01627 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre3g01627 326 Gene3D - 13 66 - -
Trre3g01627 326 SMART sant 66 114 IPR001005 -
Trre3g01627 326 SMART sant 13 63 IPR001005 -
Trre3g01627 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01627 Trre-Chr3 12961789 12963924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01627 1 224 MYB Transcription Factor Family AT5G49330 54.185 1.38e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre3g01627 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01627 K09422 - gmx:100819041 375.17